Variant report

Variant	rs7080098
Chromosome Location	chr10:18938480-18938481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18937279..18942257-chr10:18944156..18951752,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165997	Chromatin interaction
ENSG00000152487	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11813408	0.90[AFR][1000 genomes]
rs11813862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11815170	0.85[AFR][1000 genomes]
rs11815892	0.85[AFR][1000 genomes]
rs11816097	0.86[AFR][1000 genomes]
rs11818242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28633741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34426898	0.86[AFR][1000 genomes]
rs34813638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35168277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081090	1.00[AMR][1000 genomes]
rs7082812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18916800-18939800	Weak transcription	Aorta	Aorta
2	chr10:18916800-18940200	Weak transcription	Spleen	Spleen
3	chr10:18917000-18938800	Weak transcription	HSMM	muscle
4	chr10:18917000-18939600	Weak transcription	Placenta	Placenta
5	chr10:18917000-18939800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:18917000-18940200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:18917000-18940200	Weak transcription	Lung	lung
8	chr10:18921400-18939000	Weak transcription	Right Ventricle	heart
9	chr10:18922600-18939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:18925200-18939200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:18925600-18939400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:18926000-18940200	Weak transcription	Small Intestine	intestine
13	chr10:18926200-18939200	Weak transcription	Fetal Kidney	kidney
14	chr10:18926400-18938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:18927400-18939600	Weak transcription	Pancreas	Pancrea
16	chr10:18928200-18939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:18928400-18938800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:18928800-18939600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:18928800-18939600	Weak transcription	Gastric	stomach
20	chr10:18929000-18939000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:18929600-18938800	Weak transcription	Fetal Intestine Large	intestine
22	chr10:18931000-18939600	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:18933200-18939400	Weak transcription	Thymus	Thymus
24	chr10:18934600-18939400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:18935400-18938600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:18935400-18938800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:18935800-18939200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:18936400-18938800	Weak transcription	NH-A	brain
29	chr10:18936800-18939400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr10:18937000-18938800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr10:18937000-18939000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr10:18937000-18939000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:18937000-18939000	Weak transcription	Fetal Intestine Small	intestine
34	chr10:18937000-18939600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:18937000-18939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:18937000-18941400	Active TSS	GM12878-XiMat	blood
37	chr10:18937200-18938600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:18937200-18938600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr10:18937200-18939400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr10:18937200-18939400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:18937200-18939600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:18937200-18939600	Weak transcription	Left Ventricle	heart
43	chr10:18937400-18939600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr10:18937400-18939600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:18937600-18938600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:18937600-18938600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:18937600-18938800	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr10:18937600-18939600	Flanking Active TSS	Dnd41	blood
49	chr10:18937600-18941400	Active TSS	K562	blood
50	chr10:18937800-18938600	Enhancers	Primary T cells from cord blood	blood

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