Variant report

Variant	rs11818242
Chromosome Location	chr10:18939314-18939315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18938647..18942217-chr10:18945513..18950534,9	MCF-7	breast:
2	chr10:18937279..18942257-chr10:18944156..18951752,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152487	Chromatin interaction
ENSG00000165997	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11813408	0.95[AFR][1000 genomes]
rs11813862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11815170	0.91[AFR][1000 genomes]
rs11815892	0.91[AFR][1000 genomes]
rs11816097	0.91[AFR][1000 genomes]
rs11818510	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28633741	1.00[AMR][1000 genomes]
rs34426898	0.91[AFR][1000 genomes]
rs34813638	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35168277	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733967	1.00[AMR][1000 genomes]
rs7080098	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081090	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18916800-18939800	Weak transcription	Aorta	Aorta
2	chr10:18916800-18940200	Weak transcription	Spleen	Spleen
3	chr10:18917000-18939600	Weak transcription	Placenta	Placenta
4	chr10:18917000-18939800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:18917000-18940200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:18917000-18940200	Weak transcription	Lung	lung
7	chr10:18922600-18939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:18925600-18939400	Weak transcription	Brain Substantia Nigra	brain
9	chr10:18926000-18940200	Weak transcription	Small Intestine	intestine
10	chr10:18927400-18939600	Weak transcription	Pancreas	Pancrea
11	chr10:18928200-18939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:18928800-18939600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:18928800-18939600	Weak transcription	Gastric	stomach
14	chr10:18931000-18939600	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:18933200-18939400	Weak transcription	Thymus	Thymus
16	chr10:18934600-18939400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:18936800-18939400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr10:18937000-18939600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:18937000-18939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:18937000-18941400	Active TSS	GM12878-XiMat	blood
21	chr10:18937200-18939400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:18937200-18939400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:18937200-18939600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:18937200-18939600	Weak transcription	Left Ventricle	heart
25	chr10:18937400-18939600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr10:18937400-18939600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:18937600-18939600	Flanking Active TSS	Dnd41	blood
28	chr10:18937600-18941400	Active TSS	K562	blood
29	chr10:18937800-18940800	Active TSS	Liver	Liver
30	chr10:18937800-18941000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:18938000-18939400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:18938200-18939400	Enhancers	Fetal Stomach	stomach
33	chr10:18938200-18939600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:18938200-18939600	Enhancers	Primary B cells from peripheral blood	blood
35	chr10:18938200-18939800	Active TSS	Brain Angular Gyrus	brain
36	chr10:18938200-18940000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr10:18938200-18941200	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr10:18938200-18941400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:18938400-18939400	Enhancers	Adipose Nuclei	Adipose
40	chr10:18938400-18939400	Active TSS	Fetal Brain Female	brain
41	chr10:18938400-18939600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr10:18938400-18939600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:18938400-18939600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:18938400-18939800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:18938400-18941200	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr10:18938400-18941200	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr10:18938400-18941200	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr10:18938400-18941200	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr10:18938600-18939400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:18938600-18939600	Active TSS	Brain Anterior Caudate	brain

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