Variant report

Variant	rs28633741
Chromosome Location	chr10:18909856-18909857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18904719..18906384-chr10:18907466..18910292,2	K562	blood:
2	chr10:18909074..18910706-chr10:18949247..18951149,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11813408	0.80[AFR][1000 genomes]
rs11813862	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818242	1.00[AMR][1000 genomes]
rs11818510	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34813638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35168277	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080098	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081090	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082812	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
7	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
14	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
15	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
16	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
17	chr10:18877600-18916400	Weak transcription	Gastric	stomach
18	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
20	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
22	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:18885400-18916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:18891600-18916400	Weak transcription	Lung	lung
26	chr10:18895600-18916400	Weak transcription	Left Ventricle	heart
27	chr10:18896600-18916400	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:18896600-18916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:18896800-18916000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:18897200-18916400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:18898400-18916400	Weak transcription	Fetal Kidney	kidney
32	chr10:18898400-18916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:18900000-18910000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:18900000-18912600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:18900000-18915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:18900000-18915800	Weak transcription	NHEK	skin
37	chr10:18900000-18916200	Weak transcription	NHLF	lung
38	chr10:18900000-18916600	Weak transcription	Stomach Mucosa	stomach
39	chr10:18900200-18915800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr10:18900200-18916000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:18900400-18916200	Weak transcription	NH-A	brain
42	chr10:18900400-18916400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:18900600-18916400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:18900800-18915000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:18900800-18916400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:18901200-18912400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:18901200-18915600	Weak transcription	Fetal Lung	lung
48	chr10:18901200-18916400	Weak transcription	Esophagus	oesophagus
49	chr10:18901400-18915600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:18901400-18915800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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