Variant report
| Variant | rs11819657 |
|---|---|
| Chromosome Location | chr10:19007149-19007150 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARL5B-4 | chr10:19007055-19010573 | ucscGeneNc_uc001iqe_2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10508566 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10508567 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10764727 | 0.94[ASN][1000 genomes] |
| rs10826351 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10829309 | 0.89[ASN][1000 genomes] |
| rs11006702 | 0.91[ASN][1000 genomes] |
| rs11015955 | 0.94[ASN][1000 genomes] |
| rs11015970 | 0.91[ASN][1000 genomes] |
| rs11015971 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11015972 | 0.91[ASN][1000 genomes] |
| rs11015976 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11015978 | 0.87[ASN][1000 genomes] |
| rs11015979 | 0.91[ASN][1000 genomes] |
| rs12354939 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12355074 | 0.85[ASN][1000 genomes] |
| rs12359830 | 0.94[ASN][1000 genomes] |
| rs12570499 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2130533 | 0.91[ASN][1000 genomes] |
| rs55931411 | 0.94[ASN][1000 genomes] |
| rs61033847 | 0.93[ASN][1000 genomes] |
| rs7074856 | 0.91[ASN][1000 genomes] |
| rs7076492 | 0.91[ASN][1000 genomes] |
| rs7077749 | 0.96[ASN][1000 genomes] |
| rs7093661 | 0.98[ASN][1000 genomes] |
| rs7095167 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7095319 | 0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72777173 | 0.84[EUR][1000 genomes] |
| rs7895597 | 0.91[ASN][1000 genomes] |
| rs7897030 | 0.91[ASN][1000 genomes] |
| rs7901044 | 0.95[ASN][1000 genomes] |
| rs7908403 | 0.84[EUR][1000 genomes] |
| rs9919358 | 0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894915 | chr10:18984571-19257664 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv550122 | chr10:18993303-19017942 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:19002600-19008600 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr10:19002800-19007800 | Weak transcription | Hela-S3 | cervix |
