Variant report

Variant	rs72777173
Chromosome Location	chr10:19087853-19087854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1028926	0.87[ASN][1000 genomes]
rs10508566	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10508567	0.96[AMR][1000 genomes]
rs10826351	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11007325	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11007459	0.89[ASN][1000 genomes]
rs11015971	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11015976	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11819657	0.84[EUR][1000 genomes]
rs12354939	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12570499	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7095167	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7095319	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72777176	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908403	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912006	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9919358	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19085000-19093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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