Variant report

Variant	rs7912006
Chromosome Location	chr10:19085518-19085519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1028926	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10508566	0.89[CEU][hapmap];0.93[AMR][1000 genomes]
rs10508567	0.80[CEU][hapmap];0.93[AMR][1000 genomes]
rs10826351	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11007325	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11007459	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11015971	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015976	0.83[AMR][1000 genomes]
rs12354939	0.89[CEU][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.93[AMR][1000 genomes]
rs12570499	0.93[AMR][1000 genomes]
rs2495826	0.84[AFR][1000 genomes]
rs7095167	0.90[AMR][1000 genomes]
rs7095319	0.86[AMR][1000 genomes]
rs72777173	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72777176	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7908403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919358	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19085000-19093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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