Variant report

Variant	rs9919358
Chromosome Location	chr10:19042489-19042490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508566	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10508567	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764727	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10826351	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829309	0.85[ASN][1000 genomes]
rs11006702	0.91[ASN][1000 genomes]
rs11015955	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11015970	0.91[ASN][1000 genomes]
rs11015971	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015972	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11015976	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015978	0.87[ASN][1000 genomes]
rs11015979	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11591419	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11819657	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12354939	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12355074	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12359830	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12570499	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2130533	0.91[ASN][1000 genomes]
rs55931411	0.87[ASN][1000 genomes]
rs61033847	0.86[ASN][1000 genomes]
rs7074856	0.91[ASN][1000 genomes]
rs7076492	0.91[ASN][1000 genomes]
rs7077749	0.89[ASN][1000 genomes]
rs7093661	0.91[ASN][1000 genomes]
rs7095167	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7095319	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72777173	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7895597	0.91[ASN][1000 genomes]
rs7897030	0.91[ASN][1000 genomes]
rs7901044	0.95[ASN][1000 genomes]
rs7908403	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7912006	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19042000-19042800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:19042000-19043000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:19042000-19043000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:19042200-19042800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:19042200-19042800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:19042200-19043000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:19042200-19043000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:19042400-19042600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr10:19042400-19042800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:19042400-19042800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:19042400-19042800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:19042400-19042800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:19042400-19043000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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