Variant report

Variant	rs11821102
Chromosome Location	chr11:35252544-35252545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35252011..35252895-chr9:127020158..127020913,2	Hela-S3	cervix:
2	chr11:35251288..35252930-chr11:35253929..35256719,2	K562	blood:

Variant related genes	Relation type
ENSG00000119408	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12273257	0.88[JPT][hapmap]
rs12288926	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12292131	0.88[JPT][hapmap]
rs3794104	1.00[EUR][1000 genomes]
rs4141970	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv897216	chr11:35241989-35255821	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv897217	chr11:35241989-35257316	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv897218	chr11:35241989-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv897219	chr11:35242907-35257316	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv897220	chr11:35242907-35261374	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv897222	chr11:35244044-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35233400-35259600	Weak transcription	Liver	Liver
2	chr11:35236200-35254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:35236400-35253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:35236400-35253400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:35236800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
7	chr11:35237000-35253000	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:35237000-35254600	Strong transcription	HSMM	muscle
9	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel
10	chr11:35238800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:35239200-35253200	Strong transcription	NHEK	skin
12	chr11:35239200-35253600	Strong transcription	HMEC	breast
13	chr11:35239200-35257600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:35239400-35253800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:35239800-35254600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:35239800-35254600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:35239800-35255000	Strong transcription	Primary T cells from cord blood	blood
18	chr11:35240000-35253000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:35240200-35253200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:35240200-35253800	Strong transcription	Duodenum Mucosa	Duodenum
21	chr11:35240200-35254000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:35240400-35253400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:35240600-35253800	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr11:35240600-35254000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:35240600-35254400	Strong transcription	NH-A	brain
26	chr11:35240800-35254600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:35241000-35253800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:35241200-35253800	Strong transcription	Osteobl	bone
29	chr11:35241200-35259600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:35243200-35254400	Strong transcription	A549	lung
31	chr11:35243600-35258200	Weak transcription	GM12878-XiMat	blood
32	chr11:35245200-35253200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:35245400-35253000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:35245400-35259600	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:35245800-35255400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:35245800-35256600	Weak transcription	Small Intestine	intestine
37	chr11:35246000-35253400	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:35246600-35254800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:35247000-35258000	Weak transcription	Colonic Mucosa	Colon
40	chr11:35247000-35263200	Weak transcription	HSMMtube	muscle
41	chr11:35247200-35257600	Weak transcription	Thymus	Thymus
42	chr11:35248400-35253400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:35248600-35253200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:35248800-35252600	Strong transcription	Fetal Thymus	thymus
45	chr11:35248800-35253000	Strong transcription	Aorta	Aorta
46	chr11:35248800-35253800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:35249000-35253000	Strong transcription	Dnd41	blood
48	chr11:35249000-35253000	Strong transcription	Hela-S3	cervix
49	chr11:35249200-35252600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:35249400-35252800	Strong transcription	Stomach Smooth Muscle	stomach

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