Variant report

Variant	rs4141970
Chromosome Location	chr11:35247616-35247617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11821102	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12288926	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3794104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv897216	chr11:35241989-35255821	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv897217	chr11:35241989-35257316	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv897218	chr11:35241989-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv897219	chr11:35242907-35257316	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv897220	chr11:35242907-35261374	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv897222	chr11:35244044-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:35233400-35259600	Weak transcription	Liver	Liver
3	chr11:35235200-35249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:35236000-35248000	Strong transcription	Primary hematopoietic stem cells	blood
5	chr11:35236200-35252200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:35236200-35254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:35236400-35253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:35236400-35253400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr11:35236800-35248400	Strong transcription	Adipose Nuclei	Adipose
10	chr11:35236800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
12	chr11:35237000-35253000	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:35237000-35254600	Strong transcription	HSMM	muscle
14	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel
15	chr11:35238200-35250600	Weak transcription	Stomach Mucosa	stomach
16	chr11:35238400-35248000	Weak transcription	Right Ventricle	heart
17	chr11:35238800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:35239200-35248000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:35239200-35248800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:35239200-35249600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:35239200-35253200	Strong transcription	NHEK	skin
22	chr11:35239200-35253600	Strong transcription	HMEC	breast
23	chr11:35239200-35257600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:35239400-35247800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:35239400-35249000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr11:35239400-35253800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:35239800-35251600	Weak transcription	Ovary	ovary
28	chr11:35239800-35254600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:35239800-35254600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:35239800-35255000	Strong transcription	Primary T cells from cord blood	blood
31	chr11:35240000-35249400	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr11:35240000-35253000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:35240200-35248000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:35240200-35253200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:35240200-35253800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:35240200-35254000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:35240400-35248400	Strong transcription	Primary B cells from cord blood	blood
38	chr11:35240400-35253400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:35240600-35251800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:35240600-35253800	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr11:35240600-35254000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:35240600-35254400	Strong transcription	NH-A	brain
43	chr11:35240800-35254600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:35241000-35249000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:35241000-35253800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:35241200-35253800	Strong transcription	Osteobl	bone
47	chr11:35241200-35259600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:35242000-35248400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:35243200-35254400	Strong transcription	A549	lung
50	chr11:35243600-35249000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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