Variant report

Variant	rs12288926
Chromosome Location	chr11:35246845-35246846
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11821102	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3794104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4141970	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv897216	chr11:35241989-35255821	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv897217	chr11:35241989-35257316	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv897218	chr11:35241989-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv897219	chr11:35242907-35257316	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv897220	chr11:35242907-35261374	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv897222	chr11:35244044-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:35233400-35259600	Weak transcription	Liver	Liver
3	chr11:35234200-35247400	Weak transcription	Fetal Intestine Small	intestine
4	chr11:35235200-35249200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:35236000-35247600	Strong transcription	Dnd41	blood
6	chr11:35236000-35248000	Strong transcription	Primary hematopoietic stem cells	blood
7	chr11:35236200-35252200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:35236200-35254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:35236400-35253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:35236400-35253400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr11:35236800-35248400	Strong transcription	Adipose Nuclei	Adipose
12	chr11:35236800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
14	chr11:35237000-35247000	Strong transcription	Hela-S3	cervix
15	chr11:35237000-35253000	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:35237000-35254600	Strong transcription	HSMM	muscle
17	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel
18	chr11:35238200-35250600	Weak transcription	Stomach Mucosa	stomach
19	chr11:35238400-35248000	Weak transcription	Right Ventricle	heart
20	chr11:35238800-35253200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:35239200-35247200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:35239200-35248000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:35239200-35248800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:35239200-35249600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:35239200-35253200	Strong transcription	NHEK	skin
26	chr11:35239200-35253600	Strong transcription	HMEC	breast
27	chr11:35239200-35257600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:35239400-35247200	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:35239400-35247200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:35239400-35247800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:35239400-35249000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:35239400-35253800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:35239800-35251600	Weak transcription	Ovary	ovary
34	chr11:35239800-35254600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr11:35239800-35254600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:35239800-35255000	Strong transcription	Primary T cells from cord blood	blood
37	chr11:35240000-35249400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr11:35240000-35253000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:35240200-35247000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:35240200-35248000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:35240200-35253200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:35240200-35253800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr11:35240200-35254000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:35240400-35247200	Strong transcription	Pancreas	Pancrea
45	chr11:35240400-35248400	Strong transcription	Primary B cells from cord blood	blood
46	chr11:35240400-35253400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:35240600-35251800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:35240600-35253800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr11:35240600-35254000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:35240600-35254400	Strong transcription	NH-A	brain

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