Variant report

Variant	rs11822985
Chromosome Location	chr11:120733364-120733365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11218009	1.00[EUR][1000 genomes]
rs11218020	1.00[EUR][1000 genomes]
rs11218033	1.00[EUR][1000 genomes]
rs11501142	1.00[EUR][1000 genomes]
rs12270392	1.00[EUR][1000 genomes]
rs12275938	1.00[EUR][1000 genomes]
rs12278293	1.00[EUR][1000 genomes]
rs12278548	1.00[EUR][1000 genomes]
rs12279279	1.00[EUR][1000 genomes]
rs12279371	1.00[EUR][1000 genomes]
rs12285831	1.00[EUR][1000 genomes]
rs12286020	1.00[EUR][1000 genomes]
rs12289919	1.00[EUR][1000 genomes]
rs12290599	1.00[EUR][1000 genomes]
rs12291509	1.00[EUR][1000 genomes]
rs12291645	1.00[EUR][1000 genomes]
rs12294917	1.00[EUR][1000 genomes]
rs17124355	1.00[EUR][1000 genomes]
rs57090447	1.00[EUR][1000 genomes]
rs57940959	1.00[EUR][1000 genomes]
rs58190380	1.00[EUR][1000 genomes]
rs61512619	1.00[EUR][1000 genomes]
rs7114795	1.00[EUR][1000 genomes]
rs73578576	1.00[EUR][1000 genomes]
rs73578585	1.00[EUR][1000 genomes]
rs73580678	1.00[EUR][1000 genomes]
rs73580685	1.00[EUR][1000 genomes]
rs7938287	1.00[EUR][1000 genomes]
rs7948126	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120704400-120746000	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120704400-120748800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120714400-120746600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120715400-120745000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120729200-120751200	Weak transcription	Ovary	ovary
6	chr11:120730000-120733600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:120730000-120746600	Weak transcription	Fetal Lung	lung
8	chr11:120730200-120737800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:120730800-120738200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120730800-120745200	Weak transcription	Brain Angular Gyrus	brain
11	chr11:120731200-120736000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:120733000-120734400	Strong transcription	Brain Anterior Caudate	brain
13	chr11:120733200-120733400	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr11:120733200-120735600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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