Variant report
| Variant | rs17124355 |
|---|---|
| Chromosome Location | chr11:120656008-120656009 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:120655370..120658218-chr11:120660299..120663054,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11218009 | 1.00[EUR][1000 genomes] |
| rs11218020 | 1.00[EUR][1000 genomes] |
| rs11218033 | 1.00[EUR][1000 genomes] |
| rs11501142 | 1.00[EUR][1000 genomes] |
| rs11822985 | 1.00[EUR][1000 genomes] |
| rs11826149 | 1.00[AMR][1000 genomes] |
| rs12270392 | 1.00[EUR][1000 genomes] |
| rs12275938 | 1.00[EUR][1000 genomes] |
| rs12278293 | 1.00[EUR][1000 genomes] |
| rs12278548 | 1.00[EUR][1000 genomes] |
| rs12279279 | 1.00[EUR][1000 genomes] |
| rs12279371 | 1.00[EUR][1000 genomes] |
| rs12285831 | 1.00[EUR][1000 genomes] |
| rs12286020 | 1.00[EUR][1000 genomes] |
| rs12289919 | 1.00[EUR][1000 genomes] |
| rs12290599 | 1.00[EUR][1000 genomes] |
| rs12291509 | 1.00[EUR][1000 genomes] |
| rs12291645 | 1.00[EUR][1000 genomes] |
| rs12294917 | 1.00[EUR][1000 genomes] |
| rs57090447 | 1.00[EUR][1000 genomes] |
| rs57940959 | 1.00[EUR][1000 genomes] |
| rs58190380 | 1.00[EUR][1000 genomes] |
| rs61512619 | 1.00[EUR][1000 genomes] |
| rs7114795 | 1.00[EUR][1000 genomes] |
| rs73578576 | 1.00[EUR][1000 genomes] |
| rs73578585 | 1.00[EUR][1000 genomes] |
| rs73580678 | 1.00[EUR][1000 genomes] |
| rs73580685 | 1.00[EUR][1000 genomes] |
| rs7938287 | 1.00[EUR][1000 genomes] |
| rs7948126 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1053607 | chr11:120540795-120802006 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038264 | chr11:120582595-120799335 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv541181 | chr11:120582595-120799335 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv832286 | chr11:120585843-120745846 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv982961 | chr11:120649840-120656069 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:120654800-120656400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr11:120655200-120662800 | Weak transcription | Right Atrium | heart |
