Variant report

Variant	rs12279279
Chromosome Location	chr11:120713069-120713070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11218009	1.00[EUR][1000 genomes]
rs11218020	1.00[EUR][1000 genomes]
rs11218033	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs11501142	1.00[EUR][1000 genomes]
rs11822985	1.00[EUR][1000 genomes]
rs12270392	1.00[EUR][1000 genomes]
rs12275938	1.00[EUR][1000 genomes]
rs12278293	1.00[EUR][1000 genomes]
rs12278548	0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs12279371	1.00[EUR][1000 genomes]
rs12285831	1.00[EUR][1000 genomes]
rs12286020	1.00[EUR][1000 genomes]
rs12289919	1.00[EUR][1000 genomes]
rs12290599	1.00[EUR][1000 genomes]
rs12291509	1.00[EUR][1000 genomes]
rs12291645	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs12294917	1.00[EUR][1000 genomes]
rs12295088	0.95[YRI][hapmap]
rs17124355	1.00[EUR][1000 genomes]
rs57090447	1.00[EUR][1000 genomes]
rs57940959	1.00[EUR][1000 genomes]
rs58190380	1.00[EUR][1000 genomes]
rs61512619	1.00[EUR][1000 genomes]
rs7114795	1.00[EUR][1000 genomes]
rs73578576	1.00[EUR][1000 genomes]
rs73578585	1.00[EUR][1000 genomes]
rs73580678	1.00[EUR][1000 genomes]
rs73580685	1.00[EUR][1000 genomes]
rs7938287	1.00[EUR][1000 genomes]
rs7948126	1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120699400-120729200	Weak transcription	Fetal Lung	lung
2	chr11:120703600-120714600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120704400-120728400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:120704400-120746000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:120704400-120748800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:120708000-120728800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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