Variant report

Variant	rs11824758
Chromosome Location	chr11:72146146-72146147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:72144894-72146167	K562	blood:	n/a	n/a
2	ZNF384	chr11:72145027-72146458	K562	blood:	n/a	n/a
3	GATA1	chr11:72144759-72146171	PBDE	blood:	n/a	n/a
4	GATA3	chr11:72144881-72146169	MCF-7	breast:	n/a	n/a
5	HCFC1	chr11:72144586-72146190	Hela-S3	cervix:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72061795..72064274-chr11:72144176..72146895,2	MCF-7	breast:
2	chr11:72124108..72125861-chr11:72145694..72147831,2	K562	blood:
3	chr11:71938045..71940787-chr11:72145330..72147281,2	K562	blood:
4	chr11:71751168..71753291-chr11:72144647..72146804,2	MCF-7	breast:
5	chr11:71812980..71815340-chr11:72143854..72146897,3	MCF-7	breast:
6	chr11:71813081..71815809-chr11:72144185..72147079,2	K562	blood:
7	chr11:71813512..71815032-chr11:72144713..72146215,2	MCF-7	breast:
8	chr11:71942537..71944052-chr11:72144068..72146926,2	K562	blood:
9	chr11:72061191..72063131-chr11:72144186..72146277,2	K562	blood:

No data

Variant related genes	Relation type
CLPB	TF binding region
ENSG00000165458	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000137497	Chromatin interaction
ENSG00000256739	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11819949	0.87[AMR][1000 genomes]
rs11821309	0.86[AFR][1000 genomes]
rs11825565	0.85[AMR][1000 genomes]
rs11826227	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11827506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11828128	0.82[AFR][1000 genomes]
rs17162146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34264259	0.85[AMR][1000 genomes]
rs3741162	0.83[AFR][1000 genomes]
rs58007847	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60900819	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72144600-72146200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:72144800-72146200	Active TSS	Thymus	Thymus
3	chr11:72145400-72146200	Active TSS	Stomach Smooth Muscle	stomach
4	chr11:72145400-72146400	Active TSS	Placenta	Placenta
5	chr11:72145600-72147000	Weak transcription	GM12878-XiMat	blood
6	chr11:72145600-72149600	Weak transcription	NHDF-Ad	bronchial
7	chr11:72145600-72150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:72145600-72152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:72145600-72152600	Weak transcription	Right Atrium	heart
10	chr11:72145800-72146200	Enhancers	Fetal Thymus	thymus
11	chr11:72145800-72147600	Weak transcription	Primary B cells from cord blood	blood
12	chr11:72145800-72148800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:72145800-72149000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:72145800-72149600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:72145800-72150200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:72145800-72150200	Weak transcription	HMEC	breast
17	chr11:72145800-72150400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:72146000-72146400	Enhancers	HepG2	liver
19	chr11:72146000-72146600	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:72146000-72146800	Enhancers	Fetal Muscle Leg	muscle
21	chr11:72146000-72149200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:72146000-72150200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:72146000-72150200	Weak transcription	Adipose Nuclei	Adipose
24	chr11:72146000-72152000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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