Variant report

Variant	rs11831101
Chromosome Location	chr12:106752825-106752826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106694726..106698780-chr12:106749876..106753760,9	K562	blood:
2	chr12:106531533..106535020-chr12:106751427..106753733,3	MCF-7	breast:
3	chr12:106695715..106698780-chr12:106751795..106753760,4	K562	blood:
4	chr12:106693946..106698218-chr12:106750404..106754111,7	MCF-7	breast:
5	chr12:106749890..106753405-chr12:107348464..107352140,5	MCF-7	breast:
6	chr12:106639673..106643649-chr12:106748400..106753718,9	MCF-7	breast:
7	chr12:106532785..106534884-chr12:106750299..106753050,2	MCF-7	breast:
8	chr12:106640021..106643402-chr12:106749618..106753030,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260329	Chromatin interaction
ENSG00000136026	Chromatin interaction
ENSG00000258355	Chromatin interaction
ENSG00000074590	Chromatin interaction
ENSG00000151135	Chromatin interaction
ENSG00000166046	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11831881	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11833143	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12300331	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719582	0.82[EUR][1000 genomes]
rs56112923	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58491322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59245113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73186446	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73186457	0.98[EUR][1000 genomes]
rs73186466	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73186467	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73186470	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73186475	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73186479	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73186480	0.82[EUR][1000 genomes]
rs73197526	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197527	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197529	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197531	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197533	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197535	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197538	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73197542	0.86[AMR][1000 genomes]
rs7970973	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106751000-106753000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:106751200-106753000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr12:106751200-106753000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr12:106751200-106753000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr12:106751800-106753000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:106752000-106753000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:106752000-106753000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr12:106752000-106753000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:106752000-106753000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:106752000-106753000	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr12:106752000-106753000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr12:106752200-106753000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr12:106752200-106753000	Flanking Active TSS	Brain Cingulate Gyrus	brain
14	chr12:106752200-106753000	Flanking Active TSS	Brain Germinal Matrix	brain
15	chr12:106752200-106753000	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr12:106752200-106753000	Flanking Active TSS	Placenta	Placenta
17	chr12:106752200-106753000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr12:106752200-106753000	Flanking Active TSS	HMEC	breast
19	chr12:106752200-106754000	Flanking Active TSS	K562	blood
20	chr12:106752400-106753000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr12:106752400-106753000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:106752400-106753000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr12:106752400-106753000	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr12:106752400-106753000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr12:106752400-106753000	Flanking Active TSS	Fetal Brain Female	brain
26	chr12:106752400-106753000	Flanking Active TSS	Fetal Intestine Large	intestine
27	chr12:106752400-106753000	Flanking Active TSS	Fetal Lung	lung
28	chr12:106752400-106753000	Flanking Active TSS	Rectal Smooth Muscle	rectum
29	chr12:106752400-106753000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr12:106752400-106753000	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr12:106752400-106753000	Flanking Active TSS	Dnd41	blood
32	chr12:106752400-106753000	Flanking Active TSS	HUVEC	blood vessel
33	chr12:106752400-106753000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr12:106752400-106753000	Flanking Active TSS	NH-A	brain
35	chr12:106752400-106753000	Flanking Active TSS	NHLF	lung
36	chr12:106752400-106753000	Flanking Active TSS	Osteobl	bone
37	chr12:106752400-106753200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr12:106752400-106753200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:106752400-106753200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr12:106752400-106753200	Enhancers	Small Intestine	intestine
41	chr12:106752400-106753200	Flanking Active TSS	Hela-S3	cervix
42	chr12:106752400-106754600	Weak transcription	Lung	lung
43	chr12:106752400-106754800	Weak transcription	Spleen	Spleen
44	chr12:106752400-106755200	Flanking Active TSS	Liver	Liver
45	chr12:106752400-106775400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr12:106752400-106791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:106752600-106753000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:106752600-106753000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:106752600-106753000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr12:106752600-106753000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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