Variant report

Variant	rs73197529
Chromosome Location	chr12:106742383-106742384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106740945..106746236-chr12:106747854..106753428,6	MCF-7	breast:
2	chr12:106741271..106744230-chr12:106772582..106774357,2	K562	blood:
3	chr12:106740979..106743105-chr12:106751518..106753064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11831101	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11831881	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11833143	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300331	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56112923	0.88[EUR][1000 genomes]
rs58491322	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59245113	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73186446	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73186457	0.95[EUR][1000 genomes]
rs73186466	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73186467	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73186470	0.86[EUR][1000 genomes]
rs73186475	0.88[EUR][1000 genomes]
rs73186479	0.83[EUR][1000 genomes]
rs73197526	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197533	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197542	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7970973	0.88[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
4	chr12:106724000-106742600	Strong transcription	Primary B cells from cord blood	blood
5	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
6	chr12:106731200-106743600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:106733200-106742600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:106735800-106751000	Weak transcription	Colonic Mucosa	Colon
9	chr12:106736200-106751400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:106736600-106742800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:106736600-106751000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:106736800-106742600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr12:106736800-106745000	Weak transcription	Psoas Muscle	Psoas
14	chr12:106736800-106746600	Weak transcription	Pancreas	Pancrea
15	chr12:106736800-106751000	Weak transcription	Right Ventricle	heart
16	chr12:106737000-106743800	Weak transcription	Aorta	Aorta
17	chr12:106737000-106751000	Weak transcription	Fetal Thymus	thymus
18	chr12:106737200-106743000	Weak transcription	Brain Angular Gyrus	brain
19	chr12:106737200-106743400	Weak transcription	NH-A	brain
20	chr12:106737200-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:106737200-106751000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr12:106737200-106751000	Weak transcription	Fetal Lung	lung
23	chr12:106737400-106742400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr12:106737400-106742400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr12:106737400-106742600	Weak transcription	NHDF-Ad	bronchial
26	chr12:106737400-106750800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr12:106737400-106750800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr12:106737400-106751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:106737600-106743600	Weak transcription	HepG2	liver
30	chr12:106737600-106750800	Weak transcription	Fetal Intestine Small	intestine
31	chr12:106737600-106751000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr12:106737600-106751000	Weak transcription	Fetal Intestine Large	intestine
33	chr12:106737800-106750800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr12:106738400-106751000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr12:106738600-106744200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr12:106738600-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr12:106738600-106750800	Weak transcription	Fetal Heart	heart
38	chr12:106738800-106751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr12:106739400-106743600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr12:106739600-106742800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr12:106739800-106751000	Weak transcription	Fetal Muscle Leg	muscle
42	chr12:106740000-106743400	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr12:106740200-106751000	Weak transcription	Fetal Stomach	stomach
44	chr12:106740400-106743800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr12:106740400-106745200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr12:106740400-106746600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr12:106740400-106750400	Weak transcription	Liver	Liver
48	chr12:106740400-106750800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr12:106740400-106750800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr12:106740400-106751000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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