Variant report

Variant	rs73197535
Chromosome Location	chr12:106745680-106745681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106740945..106746236-chr12:106747854..106753428,6	MCF-7	breast:
2	chr12:106745575..106747920-chr12:106762436..106765393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11831101	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11831881	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11833143	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300331	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56112923	0.88[EUR][1000 genomes]
rs58491322	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59245113	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73186446	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73186457	0.95[EUR][1000 genomes]
rs73186466	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73186467	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73186470	0.86[EUR][1000 genomes]
rs73186475	0.88[EUR][1000 genomes]
rs73186479	0.83[EUR][1000 genomes]
rs73197526	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197533	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197542	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7970973	0.88[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
2	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
3	chr12:106735800-106751000	Weak transcription	Colonic Mucosa	Colon
4	chr12:106736200-106751400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:106736600-106751000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:106736800-106746600	Weak transcription	Pancreas	Pancrea
7	chr12:106736800-106751000	Weak transcription	Right Ventricle	heart
8	chr12:106737000-106751000	Weak transcription	Fetal Thymus	thymus
9	chr12:106737200-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:106737200-106751000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:106737200-106751000	Weak transcription	Fetal Lung	lung
12	chr12:106737400-106750800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:106737400-106750800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:106737400-106751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:106737600-106750800	Weak transcription	Fetal Intestine Small	intestine
16	chr12:106737600-106751000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:106737600-106751000	Weak transcription	Fetal Intestine Large	intestine
18	chr12:106737800-106750800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:106738400-106751000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr12:106738600-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:106738600-106750800	Weak transcription	Fetal Heart	heart
22	chr12:106738800-106751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr12:106739800-106751000	Weak transcription	Fetal Muscle Leg	muscle
24	chr12:106740200-106751000	Weak transcription	Fetal Stomach	stomach
25	chr12:106740400-106746600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr12:106740400-106750400	Weak transcription	Liver	Liver
27	chr12:106740400-106750800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr12:106740400-106750800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:106740400-106751000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr12:106740400-106751000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:106740400-106751000	Weak transcription	HSMMtube	muscle
32	chr12:106740400-106751400	Weak transcription	Esophagus	oesophagus
33	chr12:106740400-106751400	Weak transcription	Lung	lung
34	chr12:106740400-106751400	Weak transcription	Spleen	Spleen
35	chr12:106740600-106750800	Weak transcription	Brain Hippocampus Middle	brain
36	chr12:106740600-106750800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr12:106740600-106751000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr12:106740600-106751400	Weak transcription	Left Ventricle	heart
39	chr12:106741000-106751000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr12:106741000-106751000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr12:106741200-106750800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr12:106741200-106751000	Weak transcription	Adipose Nuclei	Adipose
43	chr12:106741200-106751000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr12:106741200-106751000	Weak transcription	Colon Smooth Muscle	Colon
45	chr12:106741200-106751200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr12:106741200-106751200	Weak transcription	Placenta	Placenta
47	chr12:106741400-106750600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr12:106742400-106751000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr12:106742600-106750400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr12:106742600-106751000	Weak transcription	Rectal Smooth Muscle	rectum

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