Variant report

Variant	rs73197526
Chromosome Location	chr12:106737769-106737770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106622014..106624785-chr12:106736683..106738357,2	MCF-7	breast:
2	chr12:106629030..106630922-chr12:106737245..106739641,2	MCF-7	breast:
3	chr12:106729650..106732454-chr12:106734851..106738258,4	MCF-7	breast:
4	chr12:106737313..106740212-chr12:106750279..106752903,4	MCF-7	breast:
5	chr12:106734254..106736719-chr12:106737374..106739758,2	MCF-7	breast:
6	chr12:106735869..106738323-chr12:106750282..106753140,2	MCF-7	breast:
7	chr12:106616646..106619535-chr12:106735717..106738545,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11831101	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11831881	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11833143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300331	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56112923	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58491322	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59245113	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73186446	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73186457	0.95[EUR][1000 genomes]
rs73186466	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73186467	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73186470	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73186475	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73186479	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73197527	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197529	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197531	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197533	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197535	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197538	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197542	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7970973	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:106707800-106738800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:106707800-106738800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
7	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr12:106713400-106741600	Weak transcription	Small Intestine	intestine
9	chr12:106720800-106738200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr12:106723200-106738000	Weak transcription	Fetal Brain Male	brain
11	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
12	chr12:106724000-106742600	Strong transcription	Primary B cells from cord blood	blood
13	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
14	chr12:106731200-106743600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr12:106731800-106737800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr12:106733200-106741000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr12:106733200-106742600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:106733400-106738600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr12:106733400-106738600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr12:106733600-106738600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr12:106734400-106739200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr12:106734600-106741200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:106735000-106740400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr12:106735200-106740400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
25	chr12:106735800-106751000	Weak transcription	Colonic Mucosa	Colon
26	chr12:106736200-106751400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:106736400-106737800	Enhancers	Fetal Muscle Leg	muscle
28	chr12:106736400-106739600	Weak transcription	Esophagus	oesophagus
29	chr12:106736400-106739600	Weak transcription	Left Ventricle	heart
30	chr12:106736400-106739600	Weak transcription	Lung	lung
31	chr12:106736400-106739600	Weak transcription	Spleen	Spleen
32	chr12:106736600-106739000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:106736600-106739800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr12:106736600-106742800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr12:106736600-106751000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr12:106736800-106738200	Weak transcription	Thymus	Thymus
37	chr12:106736800-106739000	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr12:106736800-106739600	Weak transcription	Fetal Stomach	stomach
39	chr12:106736800-106740400	Weak transcription	Placenta	Placenta
40	chr12:106736800-106742000	Weak transcription	Ovary	ovary
41	chr12:106736800-106742600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr12:106736800-106745000	Weak transcription	Psoas Muscle	Psoas
43	chr12:106736800-106746600	Weak transcription	Pancreas	Pancrea
44	chr12:106736800-106751000	Weak transcription	Right Ventricle	heart
45	chr12:106737000-106742000	Weak transcription	HUVEC	blood vessel
46	chr12:106737000-106743800	Weak transcription	Aorta	Aorta
47	chr12:106737000-106751000	Weak transcription	Fetal Thymus	thymus
48	chr12:106737200-106737800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr12:106737200-106738200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr12:106737200-106738200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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