Variant report

Variant	rs11838743
Chromosome Location	chr13:90322401-90322402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1007241	0.93[ASN][1000 genomes]
rs1327327	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327335	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1590669	0.88[ASN][1000 genomes]
rs1932307	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1932308	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2882189	0.88[ASN][1000 genomes]
rs381594	0.91[ASN][1000 genomes]
rs4362253	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4381461	0.86[ASN][1000 genomes]
rs4771792	0.85[ASN][1000 genomes]
rs4773490	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4773499	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7321395	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7321415	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7333387	0.90[ASN][1000 genomes]
rs7335862	0.88[ASN][1000 genomes]
rs7337505	0.90[ASN][1000 genomes]
rs7981236	0.88[ASN][1000 genomes]
rs7994070	0.87[ASN][1000 genomes]
rs9515588	0.88[ASN][1000 genomes]
rs9515590	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9515596	0.99[ASN][1000 genomes]
rs9515612	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9522601	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9522661	0.88[ASN][1000 genomes]
rs9522662	0.88[ASN][1000 genomes]
rs9522663	0.88[ASN][1000 genomes]
rs9522667	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9522668	0.88[ASN][1000 genomes]
rs9522669	0.86[ASN][1000 genomes]
rs9522671	0.86[ASN][1000 genomes]
rs9522672	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9522673	0.86[ASN][1000 genomes]
rs9522674	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv456059	chr13:90276827-90355675	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv562640	chr13:90276827-90355675	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1038484	chr13:90288352-90399591	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv456060	chr13:90309159-90392614	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv562641	chr13:90309159-90392614	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90321600-90323000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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