Variant report

Variant	rs7981236
Chromosome Location	chr13:90376827-90376828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-26	chr13:90376736-90376852	NONHSAT034635

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1007241	0.92[ASN][1000 genomes]
rs11838743	0.88[ASN][1000 genomes]
rs1327327	0.94[ASN][1000 genomes]
rs1327328	0.85[EUR][1000 genomes]
rs1590669	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932307	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932308	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349554	0.83[EUR][1000 genomes]
rs2882189	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381594	0.95[ASN][1000 genomes]
rs4362253	0.82[ASN][1000 genomes]
rs4381461	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4771792	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4773490	0.80[ASN][1000 genomes]
rs4773499	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4773500	0.83[EUR][1000 genomes]
rs4773501	0.83[EUR][1000 genomes]
rs4773502	0.90[EUR][1000 genomes]
rs4773503	0.90[EUR][1000 genomes]
rs4773504	0.83[EUR][1000 genomes]
rs7321395	0.84[ASN][1000 genomes]
rs7321415	0.84[ASN][1000 genomes]
rs7335862	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983923	0.83[EUR][1000 genomes]
rs7990210	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7994070	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9515590	0.80[ASN][1000 genomes]
rs9515596	0.87[ASN][1000 genomes]
rs9515612	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9515613	0.80[EUR][1000 genomes]
rs9515614	0.83[EUR][1000 genomes]
rs9515615	0.82[EUR][1000 genomes]
rs9515616	0.81[EUR][1000 genomes]
rs9522661	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522663	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522667	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522668	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522669	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522671	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522672	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522673	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522674	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522675	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9522676	0.82[EUR][1000 genomes]
rs9522677	0.83[EUR][1000 genomes]
rs9522678	0.83[EUR][1000 genomes]
rs9522679	0.83[EUR][1000 genomes]
rs9522680	0.83[EUR][1000 genomes]
rs9522684	0.83[EUR][1000 genomes]
rs9522686	0.83[EUR][1000 genomes]
rs9522687	0.83[EUR][1000 genomes]
rs9522689	0.85[EUR][1000 genomes]
rs9522691	0.81[EUR][1000 genomes]
rs9560425	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9560426	0.82[EUR][1000 genomes]
rs9583730	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1038484	chr13:90288352-90399591	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv456060	chr13:90309159-90392614	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv562641	chr13:90309159-90392614	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900866	chr13:90325420-90432585	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900867	chr13:90338898-90432585	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv456061	chr13:90355675-90448341	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv562642	chr13:90355675-90448341	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90375600-90389600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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