Variant report

Variant	rs11845658
Chromosome Location	chr14:70264548-70264549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70232739..70236319-chr14:70264002..70267714,4	MCF-7	breast:
2	chr14:70261200..70263802-chr14:70264379..70267059,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11844446	1.00[EUR][1000 genomes]
rs11844465	1.00[EUR][1000 genomes]
rs11844626	1.00[AMR][1000 genomes]
rs11845465	1.00[EUR][1000 genomes]
rs11845528	1.00[EUR][1000 genomes]
rs11847510	1.00[EUR][1000 genomes]
rs11849924	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100899	1.00[EUR][1000 genomes]
rs1803419	1.00[EUR][1000 genomes]
rs1957367	1.00[EUR][1000 genomes]
rs55959724	1.00[EUR][1000 genomes]
rs56808476	1.00[EUR][1000 genomes]
rs56859443	1.00[EUR][1000 genomes]
rs58053579	1.00[EUR][1000 genomes]
rs58503693	1.00[EUR][1000 genomes]
rs58583730	1.00[EUR][1000 genomes]
rs60085780	1.00[EUR][1000 genomes]
rs60835679	1.00[EUR][1000 genomes]
rs61498582	1.00[EUR][1000 genomes]
rs61734222	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61745930	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144597	1.00[EUR][1000 genomes]
rs73286939	1.00[EUR][1000 genomes]
rs73286943	1.00[EUR][1000 genomes]
rs73289016	1.00[AMR][1000 genomes]
rs74060220	1.00[EUR][1000 genomes]
rs74060234	1.00[EUR][1000 genomes]
rs74060251	1.00[EUR][1000 genomes]
rs74060252	1.00[EUR][1000 genomes]
rs74060256	1.00[EUR][1000 genomes]
rs74060258	1.00[EUR][1000 genomes]
rs74060261	1.00[EUR][1000 genomes]
rs74060263	1.00[EUR][1000 genomes]
rs74060267	1.00[EUR][1000 genomes]
rs74060270	1.00[EUR][1000 genomes]
rs74060281	1.00[EUR][1000 genomes]
rs74060283	1.00[EUR][1000 genomes]
rs74060286	1.00[EUR][1000 genomes]
rs74060294	1.00[EUR][1000 genomes]
rs74060297	1.00[EUR][1000 genomes]
rs74060575	1.00[EUR][1000 genomes]
rs8009986	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70247000-70264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
3	chr14:70254200-70265800	Weak transcription	Spleen	Spleen
4	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:70263400-70264800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:70263400-70265000	Enhancers	Fetal Intestine Large	intestine
7	chr14:70263400-70265000	Enhancers	Lung	lung
8	chr14:70263400-70265400	Enhancers	Placenta	Placenta
9	chr14:70263600-70265000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr14:70263600-70265200	Enhancers	Stomach Mucosa	stomach
11	chr14:70263800-70264800	Enhancers	Duodenum Mucosa	Duodenum
12	chr14:70264000-70264800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:70264000-70264800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr14:70264000-70265000	Flanking Active TSS	Liver	Liver
15	chr14:70264000-70265000	Weak transcription	Gastric	stomach
16	chr14:70264000-70265200	Enhancers	Fetal Intestine Small	intestine
17	chr14:70264000-70265200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr14:70264000-70265800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:70264200-70264600	Flanking Active TSS	HepG2	liver
20	chr14:70264200-70264600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr14:70264200-70265200	Enhancers	Colonic Mucosa	Colon
22	chr14:70264400-70265000	Enhancers	Esophagus	oesophagus

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