Variant report

Variant	rs11846084
Chromosome Location	chr14:68617324-68617325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11847621	1.00[AMR][1000 genomes]
rs11850654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104798	1.00[AMR][1000 genomes]
rs17104840	1.00[AMR][1000 genomes]
rs17105070	1.00[AMR][1000 genomes]
rs17105081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105102	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2094326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34116400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34227845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68607200-68623600	Weak transcription	Ovary	ovary
2	chr14:68612600-68628000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:68613000-68631200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:68614200-68622400	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:68614400-68624600	Weak transcription	Osteobl	bone
6	chr14:68615600-68624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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