Variant report

Variant	rs11847621
Chromosome Location	chr14:68518229-68518230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11845382	0.91[YRI][hapmap]
rs11846084	1.00[AMR][1000 genomes]
rs11848730	0.91[YRI][hapmap]
rs11850654	1.00[AMR][1000 genomes]
rs17104798	1.00[AMR][1000 genomes]
rs17104815	0.91[YRI][hapmap]
rs17104840	1.00[AMR][1000 genomes]
rs17104853	0.89[YRI][hapmap]
rs17105070	1.00[AMR][1000 genomes]
rs17105081	1.00[AMR][1000 genomes]
rs17105085	1.00[AMR][1000 genomes]
rs17105099	1.00[AMR][1000 genomes]
rs17105102	1.00[AMR][1000 genomes]
rs2094326	1.00[AMR][1000 genomes]
rs34116400	1.00[AMR][1000 genomes]
rs34227845	1.00[AMR][1000 genomes]
rs60067288	0.84[AFR][1000 genomes]
rs61301729	0.84[AFR][1000 genomes]
rs7144079	0.91[YRI][hapmap]
rs7151985	0.89[YRI][hapmap]
rs7159527	0.91[YRI][hapmap]
rs73284231	0.84[AFR][1000 genomes]
rs73284243	0.84[AFR][1000 genomes]
rs73284244	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68503600-68519800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68511600-68518400	Weak transcription	Fetal Lung	lung
3	chr14:68514600-68518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:68514800-68522600	Weak transcription	HSMM	muscle
5	chr14:68514800-68527000	Weak transcription	Ovary	ovary
6	chr14:68518000-68518400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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