Variant report

Variant	rs11845382
Chromosome Location	chr14:68400678-68400679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68400449..68401133-chr14:69310362..69311096,2	MCF-7	breast:
2	chr14:68400531..68401318-chr14:69283155..69283956,3	MCF-7	breast:
3	chr14:68399385..68401473-chr14:68675864..68677382,2	MCF-7	breast:
4	chr14:68400277..68402859-chr14:69281865..69283593,2	MCF-7	breast:
5	chr14:68400013..68402896-chr14:69251166..69253884,2	MCF-7	breast:
6	chr14:68399422..68401519-chr14:69254467..69256728,3	MCF-7	breast:
7	chr14:68400663..68402399-chr14:68697653..68700271,2	MCF-7	breast:
8	chr14:68398959..68401535-chr14:69255427..69257747,2	MCF-7	breast:
9	chr14:68398984..68402674-chr14:69258242..69262759,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11847621	0.91[YRI][hapmap]
rs11848730	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	1.00[AMR][1000 genomes]
rs17104815	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17104853	1.00[YRI][hapmap]
rs34669269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57545156	0.80[AFR][1000 genomes]
rs57580062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699339	0.83[AFR][1000 genomes]
rs7144079	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151985	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7159527	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280495	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	1.00[AMR][1000 genomes]
rs73282441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282444	1.00[AMR][1000 genomes]
rs73282452	0.89[AFR][1000 genomes]
rs73282459	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282477	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282486	1.00[AMR][1000 genomes]
rs73284288	0.83[AFR][1000 genomes]
rs73284300	0.83[AFR][1000 genomes]
rs73286206	0.83[AFR][1000 genomes]
rs73286209	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68395400-68408000	Weak transcription	Ovary	ovary
2	chr14:68399000-68400800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr14:68399000-68401200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:68399200-68402200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68399200-68402400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:68399400-68401800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:68399600-68401800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr14:68399600-68401800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:68399600-68401800	Enhancers	Fetal Stomach	stomach
10	chr14:68399600-68402200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:68399600-68402200	Enhancers	Fetal Thymus	thymus
12	chr14:68399800-68401000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:68399800-68401000	Enhancers	Fetal Muscle Leg	muscle
14	chr14:68399800-68401200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:68399800-68401200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr14:68399800-68401600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:68399800-68401800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:68399800-68402400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr14:68400000-68400800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:68400000-68400800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:68400000-68400800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:68400000-68401400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68400000-68401800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:68400000-68401800	Enhancers	Fetal Lung	lung
25	chr14:68400000-68401800	Enhancers	Thymus	Thymus
26	chr14:68400200-68400800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:68400200-68401000	Enhancers	Fetal Kidney	kidney
28	chr14:68400200-68401400	Enhancers	Adipose Nuclei	Adipose
29	chr14:68400200-68401600	Enhancers	Primary hematopoietic stem cells	blood
30	chr14:68400200-68401600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:68400200-68401600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:68400200-68401600	Enhancers	A549	lung
33	chr14:68400200-68401600	Enhancers	HUVEC	blood vessel
34	chr14:68400200-68401800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:68400200-68404200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr14:68400400-68401000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr14:68400400-68401200	Enhancers	HMEC	breast
38	chr14:68400400-68401600	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr14:68400400-68401800	Enhancers	Colon Smooth Muscle	Colon
40	chr14:68400400-68407000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:68400600-68400800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr14:68400600-68401000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:68400600-68401000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr14:68400600-68401000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr14:68400600-68401200	Enhancers	Brain Anterior Caudate	brain
46	chr14:68400600-68401200	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr14:68400600-68401200	Enhancers	Fetal Intestine Small	intestine
48	chr14:68400600-68401200	Enhancers	Stomach Mucosa	stomach
49	chr14:68400600-68401400	Enhancers	Liver	Liver
50	chr14:68400600-68401600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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