Variant report

Variant	rs57545156
Chromosome Location	chr14:68528858-68528859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11845382	0.80[AFR][1000 genomes]
rs11848079	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848730	0.81[AFR][1000 genomes]
rs11851469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104815	0.87[AFR][1000 genomes]
rs17104853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	0.86[AFR][1000 genomes]
rs57580062	0.86[AFR][1000 genomes]
rs59188074	0.92[AFR][1000 genomes]
rs60067288	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.86[AFR][1000 genomes]
rs60699339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159527	0.81[AFR][1000 genomes]
rs73282432	0.81[AFR][1000 genomes]
rs73282441	0.86[AFR][1000 genomes]
rs73282452	0.86[AFR][1000 genomes]
rs73282459	0.86[AFR][1000 genomes]
rs73282474	0.92[AFR][1000 genomes]
rs73282477	0.92[AFR][1000 genomes]
rs73282486	0.92[AFR][1000 genomes]
rs73282492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284288	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68527800-68530600	Weak transcription	Fetal Lung	lung
2	chr14:68527800-68532400	Weak transcription	Small Intestine	intestine
3	chr14:68528200-68531800	Weak transcription	Ovary	ovary

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