Variant report

Variant	rs73282477
Chromosome Location	chr14:68430832-68430833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68428226..68431035-chr14:68543986..68545553,2	MCF-7	breast:
2	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
3	chr14:68430688..68433129-chr14:68446036..68448949,3	MCF-7	breast:
4	chr14:68421406..68425336-chr14:68430124..68433413,6	MCF-7	breast:
5	chr14:68429320..68431742-chr14:68549639..68551221,2	MCF-7	breast:
6	chr14:68428980..68431141-chr14:69262276..69265178,2	MCF-7	breast:
7	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
8	chr14:68430008..68431748-chr14:68439657..68441411,3	MCF-7	breast:
9	chr14:68430411..68433270-chr14:68602747..68607900,7	MCF-7	breast:
10	chr14:68429695..68431817-chr14:69281066..69283231,2	MCF-7	breast:
11	chr14:68429774..68432676-chr14:68633532..68635323,2	MCF-7	breast:
12	chr14:68430287..68432974-chr14:68711186..68712879,2	MCF-7	breast:
13	chr14:68429820..68432700-chr14:68441833..68443817,2	MCF-7	breast:
14	chr14:68428134..68434454-chr14:69257495..69262698,9	MCF-7	breast:
15	chr14:68430178..68431865-chr14:69259598..69261453,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11845382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848079	0.82[AFR][1000 genomes]
rs11848730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	1.00[AMR][1000 genomes]
rs11851469	0.89[AFR][1000 genomes]
rs17104815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104853	0.95[AFR][1000 genomes]
rs34669269	1.00[AMR][1000 genomes]
rs34718860	0.95[AFR][1000 genomes]
rs35288178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57545156	0.92[AFR][1000 genomes]
rs57580062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067288	0.92[AFR][1000 genomes]
rs60381652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699339	0.89[AFR][1000 genomes]
rs61203226	0.84[AFR][1000 genomes]
rs61301729	0.92[AFR][1000 genomes]
rs7144079	1.00[AMR][1000 genomes]
rs7151985	1.00[AMR][1000 genomes]
rs7159527	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280495	1.00[AMR][1000 genomes]
rs73282427	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282444	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282452	0.95[AFR][1000 genomes]
rs73282459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282492	0.95[AFR][1000 genomes]
rs73284231	0.92[AFR][1000 genomes]
rs73284243	0.92[AFR][1000 genomes]
rs73284244	0.92[AFR][1000 genomes]
rs73284254	0.89[AFR][1000 genomes]
rs73284287	0.84[AFR][1000 genomes]
rs73284288	0.89[AFR][1000 genomes]
rs73284300	0.89[AFR][1000 genomes]
rs73286206	0.89[AFR][1000 genomes]
rs73286209	0.89[AFR][1000 genomes]
rs73286213	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
2	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
4	chr14:68427400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:68428200-68432200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr14:68428600-68433400	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68428600-68435000	Enhancers	Fetal Intestine Large	intestine
8	chr14:68428800-68433000	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:68429200-68432400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:68429200-68433800	Weak transcription	Primary T cells from cord blood	blood
11	chr14:68429400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68429400-68445200	Weak transcription	Ovary	ovary
13	chr14:68429600-68431200	Weak transcription	Primary B cells from cord blood	blood
14	chr14:68429600-68432400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:68429600-68444400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:68430000-68433800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr14:68430200-68431000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr14:68430200-68431200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:68430200-68433600	Enhancers	Fetal Intestine Small	intestine
20	chr14:68430400-68431000	Enhancers	A549	lung
21	chr14:68430400-68431200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr14:68430400-68431200	Active TSS	NHDF-Ad	bronchial
23	chr14:68430400-68431400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:68430400-68431400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:68430400-68431600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:68430400-68431600	Active TSS	Adipose Nuclei	Adipose
27	chr14:68430400-68431800	Flanking Active TSS	NHEK	skin
28	chr14:68430400-68434400	Enhancers	Stomach Mucosa	stomach
29	chr14:68430600-68431000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:68430600-68431200	Active TSS	Right Atrium	heart
31	chr14:68430600-68431200	Active TSS	NHLF	lung
32	chr14:68430600-68431400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:68430600-68431400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:68430600-68431400	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr14:68430600-68431800	Enhancers	Liver	Liver
36	chr14:68430600-68433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr14:68430600-68434600	Enhancers	Duodenum Mucosa	Duodenum
38	chr14:68430800-68431000	Enhancers	Hela-S3	cervix
39	chr14:68430800-68431000	Flanking Active TSS	Osteobl	bone
40	chr14:68430800-68431200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:68430800-68431200	Flanking Active TSS	Fetal Lung	lung
42	chr14:68430800-68431200	Flanking Active TSS	HMEC	breast
43	chr14:68430800-68431400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:68430800-68432600	Enhancers	Placenta Amnion	Placenta Amnion
45	chr14:68430800-68433000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr14:68430800-68433400	Enhancers	Fetal Stomach	stomach

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