Variant report

Variant	rs73282427
Chromosome Location	chr14:68397143-68397144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11845382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	1.00[AMR][1000 genomes]
rs17104815	1.00[AMR][1000 genomes]
rs17104853	0.81[AFR][1000 genomes]
rs34669269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.81[AFR][1000 genomes]
rs35288178	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580062	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699339	0.81[AFR][1000 genomes]
rs7144079	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151985	1.00[AMR][1000 genomes]
rs7159527	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282444	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282452	0.92[AFR][1000 genomes]
rs73282459	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282477	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282486	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282492	0.81[AFR][1000 genomes]
rs73284288	0.81[AFR][1000 genomes]
rs73284300	0.81[AFR][1000 genomes]
rs73286206	0.81[AFR][1000 genomes]
rs73286209	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68386600-68399800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68392800-68399000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:68392800-68399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68392800-68399400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68395400-68408000	Weak transcription	Ovary	ovary
6	chr14:68396000-68399800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:68396400-68399600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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