Variant report

Variant	rs73280495
Chromosome Location	chr14:68375580-68375581
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11845382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848730	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104815	1.00[AMR][1000 genomes]
rs34669269	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	1.00[AMR][1000 genomes]
rs57580062	1.00[AMR][1000 genomes]
rs59188074	1.00[AMR][1000 genomes]
rs60381652	1.00[AMR][1000 genomes]
rs7144079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151985	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282427	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	1.00[AMR][1000 genomes]
rs73282441	1.00[AMR][1000 genomes]
rs73282444	1.00[AMR][1000 genomes]
rs73282459	1.00[AMR][1000 genomes]
rs73282474	1.00[AMR][1000 genomes]
rs73282477	1.00[AMR][1000 genomes]
rs73282486	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68368400-68382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68374600-68375600	Enhancers	Fetal Muscle Leg	muscle
3	chr14:68374800-68375600	Enhancers	Fetal Stomach	stomach
4	chr14:68375200-68375600	Enhancers	Fetal Kidney	kidney
5	chr14:68375200-68375600	Enhancers	Fetal Lung	lung
6	chr14:68375200-68375600	Flanking Active TSS	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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