Variant report

Variant	rs73282444
Chromosome Location	chr14:68412634-68412635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68411140..68412950-chr14:68548883..68551088,2	MCF-7	breast:
2	chr14:68405383..68414524-chr14:68603693..68608960,22	MCF-7	breast:
3	chr14:68410124..68413051-chr14:68932315..68935332,3	MCF-7	breast:
4	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
5	chr14:68412401..68415259-chr14:68423760..68426375,2	MCF-7	breast:
6	chr14:68403008..68415592-chr14:69254956..69264690,41	MCF-7	breast:
7	chr14:68410049..68412875-chr14:68551981..68554163,2	MCF-7	breast:
8	chr14:68406635..68408147-chr14:68411464..68413637,2	MCF-7	breast:
9	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
10	chr14:68409488..68412789-chr14:68771965..68776404,3	MCF-7	breast:
11	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
12	chr14:68410663..68413615-chr14:68431263..68433122,2	MCF-7	breast:
13	chr14:68403242..68413680-chr14:69255078..69264293,34	MCF-7	breast:
14	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
15	chr14:68409262..68413026-chr14:68656289..68660234,5	MCF-7	breast:
16	chr14:68408216..68412729-chr14:68747829..68750873,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11845382	1.00[AMR][1000 genomes]
rs11848730	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	1.00[AMR][1000 genomes]
rs17104815	1.00[AMR][1000 genomes]
rs34669269	1.00[AMR][1000 genomes]
rs35288178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144079	1.00[AMR][1000 genomes]
rs7151985	1.00[AMR][1000 genomes]
rs7159527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280495	1.00[AMR][1000 genomes]
rs73282427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282452	0.89[AFR][1000 genomes]
rs73282459	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282477	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282486	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68420200	Weak transcription	Ovary	ovary
2	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
4	chr14:68409400-68415800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:68409400-68416800	Weak transcription	Aorta	Aorta
6	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:68409600-68412800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:68410800-68412800	Enhancers	Duodenum Mucosa	Duodenum
10	chr14:68412000-68414400	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68412000-68421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
13	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
14	chr14:68412200-68412800	Enhancers	A549	lung
15	chr14:68412200-68416200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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