Variant report

Variant	rs73282474
Chromosome Location	chr14:68428867-68428868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68421973..68423827-chr14:68427831..68430773,2	K562	blood:
2	chr14:68428226..68431035-chr14:68543986..68545553,2	MCF-7	breast:
3	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
4	chr14:68428107..68429645-chr14:68432479..68434290,2	MCF-7	breast:
5	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
6	chr14:68425055..68428932-chr14:69256531..69260317,3	MCF-7	breast:
7	chr14:68428134..68434454-chr14:69257495..69262698,9	MCF-7	breast:
8	chr14:68416521..68418894-chr14:68426860..68428959,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11845382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848079	0.82[AFR][1000 genomes]
rs11848730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	1.00[AMR][1000 genomes]
rs11851469	0.89[AFR][1000 genomes]
rs17104815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104853	0.95[AFR][1000 genomes]
rs34669269	1.00[AMR][1000 genomes]
rs34718860	0.95[AFR][1000 genomes]
rs35288178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57545156	0.92[AFR][1000 genomes]
rs57580062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067288	0.92[AFR][1000 genomes]
rs60381652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699339	0.89[AFR][1000 genomes]
rs61203226	0.84[AFR][1000 genomes]
rs61301729	0.92[AFR][1000 genomes]
rs7144079	1.00[AMR][1000 genomes]
rs7151985	1.00[AMR][1000 genomes]
rs7159527	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280495	1.00[AMR][1000 genomes]
rs73282427	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282444	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282452	0.95[AFR][1000 genomes]
rs73282459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282492	0.95[AFR][1000 genomes]
rs73284231	0.92[AFR][1000 genomes]
rs73284243	0.92[AFR][1000 genomes]
rs73284244	0.92[AFR][1000 genomes]
rs73284254	0.89[AFR][1000 genomes]
rs73284287	0.84[AFR][1000 genomes]
rs73284288	0.89[AFR][1000 genomes]
rs73284300	0.89[AFR][1000 genomes]
rs73286206	0.89[AFR][1000 genomes]
rs73286209	0.89[AFR][1000 genomes]
rs73286213	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
6	chr14:68427400-68429600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:68427400-68430200	Enhancers	Duodenum Mucosa	Duodenum
8	chr14:68427400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:68427600-68429200	Enhancers	Stomach Mucosa	stomach
10	chr14:68427600-68429400	Enhancers	Fetal Lung	lung
11	chr14:68428000-68429000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr14:68428000-68429200	Weak transcription	Ovary	ovary
13	chr14:68428000-68429600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr14:68428000-68429800	Enhancers	Fetal Intestine Small	intestine
15	chr14:68428000-68430000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:68428200-68429600	Enhancers	Primary hematopoietic stem cells	blood
17	chr14:68428200-68432200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr14:68428400-68429600	Enhancers	Primary B cells from cord blood	blood
19	chr14:68428400-68430800	Weak transcription	Fetal Stomach	stomach
20	chr14:68428600-68429600	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:68428600-68429600	Enhancers	Liver	Liver
22	chr14:68428600-68429600	Flanking Active TSS	GM12878-XiMat	blood
23	chr14:68428600-68429800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr14:68428600-68433400	Enhancers	Colon Smooth Muscle	Colon
25	chr14:68428600-68435000	Enhancers	Fetal Intestine Large	intestine
26	chr14:68428800-68429000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:68428800-68429400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:68428800-68429400	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr14:68428800-68429400	Enhancers	A549	lung
30	chr14:68428800-68433000	Enhancers	Rectal Smooth Muscle	rectum

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