Variant report

Variant	rs11848079
Chromosome Location	chr14:68536474-68536475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11851469	1.00[AMR][1000 genomes]
rs17104853	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57186043	0.93[AFR][1000 genomes]
rs57545156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	0.82[AFR][1000 genomes]
rs60067288	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699339	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	0.82[AFR][1000 genomes]
rs73282477	0.82[AFR][1000 genomes]
rs73282486	0.82[AFR][1000 genomes]
rs73282492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	1.00[AMR][1000 genomes]
rs73284287	1.00[AMR][1000 genomes]
rs73284288	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284300	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286209	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68536200-68538200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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