Variant report

Variant	rs73284300
Chromosome Location	chr14:68543596-68543597
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68542366..68543945-chr14:69261345..69263319,2	MCF-7	breast:
2	chr14:68542852..68544986-chr14:68546173..68547704,2	K562	blood:
3	chr14:68543487..68545559-chr14:68606941..68608872,2	MCF-7	breast:
4	chr14:68541688..68545482-chr14:68601842..68606347,5	MCF-7	breast:
5	chr14:68542242..68544214-chr14:68550755..68552460,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11845382	0.83[AFR][1000 genomes]
rs11848079	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104815	0.84[AFR][1000 genomes]
rs17104853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	0.84[AFR][1000 genomes]
rs57545156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580062	0.84[AFR][1000 genomes]
rs59188074	0.89[AFR][1000 genomes]
rs60067288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.84[AFR][1000 genomes]
rs60699339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282427	0.81[AFR][1000 genomes]
rs73282441	0.84[AFR][1000 genomes]
rs73282452	0.84[AFR][1000 genomes]
rs73282459	0.84[AFR][1000 genomes]
rs73282474	0.89[AFR][1000 genomes]
rs73282477	0.89[AFR][1000 genomes]
rs73282486	0.89[AFR][1000 genomes]
rs73282492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68538200-68543600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68541600-68547200	Weak transcription	Fetal Lung	lung
5	chr14:68541800-68544800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:68541800-68547200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:68542000-68547000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:68542200-68544000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:68542200-68547200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:68542400-68544000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:68542400-68546800	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:68542600-68544000	Enhancers	Fetal Intestine Small	intestine
14	chr14:68542600-68546600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:68542600-68546600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:68542600-68547000	Weak transcription	Gastric	stomach
17	chr14:68542600-68548000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:68542600-68551000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:68542600-68552400	Weak transcription	Lung	lung
20	chr14:68542800-68543800	Enhancers	NHEK	skin
21	chr14:68542800-68544400	Enhancers	A549	lung
22	chr14:68542800-68547000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:68542800-68547000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr14:68542800-68547200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:68542800-68547200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:68542800-68552000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr14:68542800-68552400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:68543000-68543600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:68543000-68543800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:68543000-68546600	Weak transcription	HepG2	liver
32	chr14:68543000-68546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:68543200-68546800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:68543400-68543800	Weak transcription	Stomach Mucosa	stomach

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