Variant report

Variant	rs11851469
Chromosome Location	chr14:68518329-68518330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11848079	1.00[AMR][1000 genomes]
rs17104815	0.84[AFR][1000 genomes]
rs17104853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	0.84[AFR][1000 genomes]
rs57545156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580062	0.84[AFR][1000 genomes]
rs59188074	0.89[AFR][1000 genomes]
rs60067288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.84[AFR][1000 genomes]
rs60699339	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282441	0.84[AFR][1000 genomes]
rs73282452	0.84[AFR][1000 genomes]
rs73282459	0.84[AFR][1000 genomes]
rs73282474	0.89[AFR][1000 genomes]
rs73282477	0.89[AFR][1000 genomes]
rs73282486	0.89[AFR][1000 genomes]
rs73282492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284287	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284288	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284300	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68503600-68519800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68511600-68518400	Weak transcription	Fetal Lung	lung
3	chr14:68514600-68518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:68514800-68522600	Weak transcription	HSMM	muscle
5	chr14:68514800-68527000	Weak transcription	Ovary	ovary
6	chr14:68518000-68518400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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