Variant report

Variant	rs73284287
Chromosome Location	chr14:68532276-68532277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11848079	1.00[AMR][1000 genomes]
rs11851469	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104853	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57545156	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	0.84[AFR][1000 genomes]
rs60067288	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699339	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	0.84[AFR][1000 genomes]
rs73282477	0.84[AFR][1000 genomes]
rs73282486	0.84[AFR][1000 genomes]
rs73282492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68527800-68532400	Weak transcription	Small Intestine	intestine
2	chr14:68531800-68532400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:68531800-68532400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:68531800-68532400	ZNF genes & repeats	Esophagus	oesophagus
5	chr14:68531800-68532400	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr14:68531800-68532400	Enhancers	Ovary	ovary
7	chr14:68531800-68532400	Enhancers	Pancreas	Pancrea
8	chr14:68532000-68532400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:68532000-68532400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:68532000-68532400	ZNF genes & repeats	Aorta	Aorta
11	chr14:68532000-68532400	ZNF genes & repeats	Gastric	stomach
12	chr14:68532000-68532400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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