Variant report

Variant	rs73286209
Chromosome Location	chr14:68552214-68552215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68550358..68553138-chr14:68762603..68764718,2	MCF-7	breast:
2	chr14:68542242..68544214-chr14:68550755..68552460,2	MCF-7	breast:
3	chr14:68546000..68548241-chr14:68549428..68552424,3	MCF-7	breast:
4	chr14:68549897..68552411-chr14:68713293..68716629,3	MCF-7	breast:
5	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
6	chr14:68550172..68552587-chr14:68933806..68935725,2	MCF-7	breast:
7	chr14:68410049..68412875-chr14:68551981..68554163,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11845382	0.83[AFR][1000 genomes]
rs11848079	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104815	0.84[AFR][1000 genomes]
rs17104853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	0.84[AFR][1000 genomes]
rs57545156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580062	0.84[AFR][1000 genomes]
rs59188074	0.89[AFR][1000 genomes]
rs60067288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.84[AFR][1000 genomes]
rs60699339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282427	0.81[AFR][1000 genomes]
rs73282441	0.84[AFR][1000 genomes]
rs73282452	0.84[AFR][1000 genomes]
rs73282459	0.84[AFR][1000 genomes]
rs73282474	0.89[AFR][1000 genomes]
rs73282477	0.89[AFR][1000 genomes]
rs73282486	0.89[AFR][1000 genomes]
rs73282492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68552400	Weak transcription	Ovary	ovary
2	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:68542600-68552400	Weak transcription	Lung	lung
4	chr14:68542800-68552400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:68544000-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:68545800-68555800	Weak transcription	Small Intestine	intestine
8	chr14:68546200-68554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:68547000-68552400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:68547400-68555000	Weak transcription	Psoas Muscle	Psoas
12	chr14:68547600-68554000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:68548400-68552800	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:68548600-68552600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:68549200-68554000	Enhancers	Fetal Lung	lung
16	chr14:68549200-68555400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:68549600-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:68550000-68554800	Weak transcription	NHEK	skin
19	chr14:68550200-68555000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:68550800-68553000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68551000-68552600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr14:68551000-68552800	Enhancers	A549	lung
23	chr14:68551400-68552400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:68551400-68552800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr14:68551400-68555000	Weak transcription	Fetal Kidney	kidney
26	chr14:68551400-68555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:68551600-68553000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr14:68551800-68553200	Enhancers	HepG2	liver
29	chr14:68551800-68553400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr14:68552000-68553000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr14:68552000-68553000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr14:68552000-68553200	Enhancers	Fetal Intestine Small	intestine
33	chr14:68552000-68553400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr14:68552200-68552800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr14:68552200-68553000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:68552200-68553200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:68552200-68553200	Enhancers	HUES6 Cell Line	embryonic stem cell

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