Variant report

Variant	rs73284288
Chromosome Location	chr14:68535574-68535575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68524998..68527629-chr14:68533348..68536338,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11845382	0.83[AFR][1000 genomes]
rs11848079	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104815	0.84[AFR][1000 genomes]
rs17104853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34718860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35288178	0.84[AFR][1000 genomes]
rs57545156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580062	0.84[AFR][1000 genomes]
rs59188074	0.89[AFR][1000 genomes]
rs60067288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60381652	0.84[AFR][1000 genomes]
rs60699339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61203226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282427	0.81[AFR][1000 genomes]
rs73282441	0.84[AFR][1000 genomes]
rs73282452	0.84[AFR][1000 genomes]
rs73282459	0.84[AFR][1000 genomes]
rs73282474	0.89[AFR][1000 genomes]
rs73282477	0.89[AFR][1000 genomes]
rs73282486	0.89[AFR][1000 genomes]
rs73282492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68536200	Weak transcription	Gastric	stomach
2	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
3	chr14:68532400-68552400	Weak transcription	Ovary	ovary
4	chr14:68534600-68536200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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