Variant report

Variant	rs60381652
Chromosome Location	chr14:68409224-68409225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68405383..68414524-chr14:68603693..68608960,22	MCF-7	breast:
2	chr14:68408294..68410431-chr14:68776471..68779098,2	MCF-7	breast:
3	chr14:68407825..68409663-chr14:68862342..68864207,2	MCF-7	breast:
4	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
5	chr14:68407550..68410213-chr14:68431629..68433238,2	MCF-7	breast:
6	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
7	chr14:68406502..68410391-chr14:69284099..69289375,6	MCF-7	breast:
8	chr14:68404777..68407278-chr14:68408888..68411874,2	K562	blood:
9	chr14:68403008..68415592-chr14:69254956..69264690,41	MCF-7	breast:
10	chr14:68351177..68353936-chr14:68408156..68410622,2	MCF-7	breast:
11	chr14:68407980..68410923-chr14:68417842..68420076,2	K562	blood:
12	chr14:68408049..68410291-chr14:68611214..68613835,3	MCF-7	breast:
13	chr14:68407338..68412061-chr14:68925199..68928533,5	MCF-7	breast:
14	chr14:68406192..68411564-chr14:69279428..69286293,11	MCF-7	breast:
15	chr14:68406980..68410129-chr14:68693689..68698967,5	MCF-7	breast:
16	chr14:68408730..68410665-chr14:68641131..68642869,2	MCF-7	breast:
17	chr14:68405495..68411980-chr14:69250946..69254866,9	MCF-7	breast:
18	chr14:68406708..68410646-chr14:69052499..69056687,4	MCF-7	breast:
19	chr14:68408832..68411171-chr14:69041848..69043615,2	MCF-7	breast:
20	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
21	chr14:68407881..68410251-chr14:68645249..68646841,2	MCF-7	breast:
22	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
23	chr14:68407418..68410166-chr14:68654124..68655771,2	MCF-7	breast:
24	chr14:68407343..68410074-chr14:68773850..68776325,3	MCF-7	breast:
25	chr14:68408949..68410726-chr14:68639004..68640689,2	MCF-7	breast:
26	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
27	chr14:68408871..68410564-chr14:69171444..69174223,2	MCF-7	breast:
28	chr14:68407933..68410630-chr14:69252286..69254725,3	MCF-7	breast:
29	chr14:68403242..68413680-chr14:69255078..69264293,34	MCF-7	breast:
30	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
31	chr14:68408062..68409721-chr14:68415116..68416727,2	MCF-7	breast:
32	chr14:68408216..68412729-chr14:68747829..68750873,4	MCF-7	breast:
33	chr14:68302059..68305269-chr14:68407604..68409424,3	MCF-7	breast:
34	chr14:68406606..68409324-chr14:68699073..68700717,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11845382	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848730	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11849285	1.00[AMR][1000 genomes]
rs11851469	0.84[AFR][1000 genomes]
rs17104815	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104853	0.89[AFR][1000 genomes]
rs34669269	1.00[AMR][1000 genomes]
rs34718860	0.89[AFR][1000 genomes]
rs35288178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57545156	0.86[AFR][1000 genomes]
rs57580062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59188074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067288	0.87[AFR][1000 genomes]
rs60699339	0.84[AFR][1000 genomes]
rs61301729	0.87[AFR][1000 genomes]
rs7144079	1.00[AMR][1000 genomes]
rs7151985	1.00[AMR][1000 genomes]
rs7159527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280495	1.00[AMR][1000 genomes]
rs73282427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282432	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282452	1.00[AFR][1000 genomes]
rs73282459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282486	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282492	0.89[AFR][1000 genomes]
rs73284231	0.87[AFR][1000 genomes]
rs73284243	0.87[AFR][1000 genomes]
rs73284244	0.87[AFR][1000 genomes]
rs73284254	0.84[AFR][1000 genomes]
rs73284288	0.84[AFR][1000 genomes]
rs73284300	0.84[AFR][1000 genomes]
rs73286206	0.84[AFR][1000 genomes]
rs73286209	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68403800-68409400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr14:68404000-68409600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:68404200-68409600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68406200-68409400	Enhancers	HepG2	liver
5	chr14:68406800-68411800	Enhancers	Fetal Stomach	stomach
6	chr14:68406800-68412000	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68407000-68409400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:68407000-68409400	Enhancers	Fetal Kidney	kidney
9	chr14:68407000-68409400	Enhancers	Osteobl	bone
10	chr14:68407000-68411800	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:68407000-68412000	Enhancers	NHLF	lung
12	chr14:68407200-68409400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:68407200-68409400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:68407200-68409400	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:68407200-68409400	Enhancers	Fetal Intestine Small	intestine
16	chr14:68407200-68409400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:68407200-68409400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:68407200-68409400	Enhancers	NHEK	skin
19	chr14:68407200-68409600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:68407200-68409600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:68407200-68411800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr14:68407400-68409400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:68407600-68409400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr14:68407600-68409400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr14:68407600-68409400	Enhancers	Fetal Intestine Large	intestine
26	chr14:68407600-68409400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr14:68407600-68409400	Flanking Active TSS	A549	lung
28	chr14:68407600-68409600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr14:68407600-68410400	Enhancers	Stomach Smooth Muscle	stomach
30	chr14:68407600-68411600	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr14:68408000-68409400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:68408000-68410400	Weak transcription	Brain Anterior Caudate	brain
33	chr14:68408400-68409400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:68408400-68409400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:68408400-68410400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:68408400-68410400	Weak transcription	Brain Substantia Nigra	brain
37	chr14:68408400-68411400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:68408600-68409400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:68408600-68409400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr14:68408600-68409600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:68408600-68409600	Enhancers	Brain Germinal Matrix	brain
42	chr14:68408600-68409600	Enhancers	Hela-S3	cervix
43	chr14:68408600-68410400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:68408600-68410400	Weak transcription	HSMM	muscle
45	chr14:68408600-68410600	Weak transcription	GM12878-XiMat	blood
46	chr14:68408600-68410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:68408600-68410800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr14:68408600-68411000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:68408600-68411000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr14:68408600-68411000	Weak transcription	NH-A	brain

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