Variant report

Variant	rs17104840
Chromosome Location	chr14:68446288-68446289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10525614	1.00[AMR][1000 genomes]
rs11846084	1.00[AMR][1000 genomes]
rs11847621	1.00[AMR][1000 genomes]
rs11850654	1.00[AMR][1000 genomes]
rs17104798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105070	1.00[AMR][1000 genomes]
rs17105081	1.00[AMR][1000 genomes]
rs17105085	1.00[AMR][1000 genomes]
rs17105099	1.00[AMR][1000 genomes]
rs17105102	1.00[AMR][1000 genomes]
rs2094326	1.00[AMR][1000 genomes]
rs34116400	1.00[AMR][1000 genomes]
rs34227845	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68438600-68451200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68442600-68454400	Weak transcription	Fetal Kidney	kidney
3	chr14:68443600-68446400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:68444600-68449200	Weak transcription	Fetal Intestine Small	intestine
5	chr14:68444600-68449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68444600-68449600	Weak transcription	Stomach Mucosa	stomach
7	chr14:68444600-68449600	Weak transcription	HMEC	breast
8	chr14:68444800-68449600	Weak transcription	A549	lung
9	chr14:68445800-68447000	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:68445800-68449600	Weak transcription	Fetal Lung	lung
11	chr14:68445800-68451000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68445800-68454600	Weak transcription	Ovary	ovary
13	chr14:68446000-68448000	Weak transcription	Psoas Muscle	Psoas
14	chr14:68446000-68449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:68446000-68451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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