Variant report

Variant	rs34227845
Chromosome Location	chr14:68612084-68612085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68610708..68612587-chr14:68659424..68661002,2	MCF-7	breast:
2	chr14:68610567..68614187-chr14:69258948..69261622,5	MCF-7	breast:
3	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
4	chr14:68610876..68614482-chr14:68656921..68659073,4	MCF-7	breast:
5	chr14:68610783..68613857-chr14:68656944..68660243,4	MCF-7	breast:
6	chr14:68604583..68613347-chr14:69257128..69263457,24	MCF-7	breast:
7	chr14:68609991..68612093-chr14:69279827..69282795,2	MCF-7	breast:
8	chr14:68408049..68410291-chr14:68611214..68613835,3	MCF-7	breast:
9	chr14:68611791..68614328-chr14:68697550..68699528,2	MCF-7	breast:
10	chr14:68610235..68612397-chr14:68697672..68699451,2	MCF-7	breast:
11	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11846084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847621	1.00[AMR][1000 genomes]
rs11850654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104798	1.00[AMR][1000 genomes]
rs17104840	1.00[AMR][1000 genomes]
rs17105070	1.00[AMR][1000 genomes]
rs17105081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105102	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2094326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34116400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68601800-68613600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:68601800-68614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68601800-68614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:68601800-68615600	Enhancers	HMEC	breast
5	chr14:68603800-68612400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:68603800-68612800	Enhancers	Fetal Intestine Large	intestine
7	chr14:68603800-68614000	Enhancers	Fetal Intestine Small	intestine
8	chr14:68603800-68614400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:68603800-68614600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:68603800-68614800	Enhancers	HSMM	muscle
11	chr14:68604200-68614800	Enhancers	NHLF	lung
12	chr14:68604400-68613200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:68604800-68613000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:68605000-68614800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:68605800-68613800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:68606200-68613200	Enhancers	Osteobl	bone
17	chr14:68606200-68614000	Enhancers	Fetal Muscle Leg	muscle
18	chr14:68606400-68613400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:68606800-68614800	Enhancers	NHDF-Ad	bronchial
20	chr14:68607200-68623600	Weak transcription	Ovary	ovary
21	chr14:68607600-68615000	Enhancers	NHEK	skin
22	chr14:68607800-68616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:68608400-68613400	Weak transcription	Fetal Heart	heart
24	chr14:68608400-68613800	Enhancers	Primary hematopoietic stem cells	blood
25	chr14:68608400-68613800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr14:68608800-68612200	Enhancers	Primary T cells from cord blood	blood
27	chr14:68608800-68612800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr14:68609200-68612200	Enhancers	Fetal Thymus	thymus
29	chr14:68609600-68612200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:68609600-68612200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:68609600-68612200	Enhancers	Thymus	Thymus
32	chr14:68609600-68613000	Enhancers	Pancreas	Pancrea
33	chr14:68609600-68613600	Enhancers	Adipose Nuclei	Adipose
34	chr14:68609600-68614000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:68609600-68614000	Enhancers	Small Intestine	intestine
36	chr14:68609600-68614200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:68609800-68612400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr14:68609800-68612600	Enhancers	Duodenum Mucosa	Duodenum
39	chr14:68609800-68613000	Enhancers	Stomach Smooth Muscle	stomach
40	chr14:68609800-68613200	Enhancers	HSMMtube	muscle
41	chr14:68609800-68613600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:68609800-68613800	Enhancers	Fetal Stomach	stomach
43	chr14:68609800-68614800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr14:68610000-68613000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr14:68610000-68613200	Enhancers	NH-A	brain
46	chr14:68610200-68612200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:68610200-68613000	Enhancers	HUVEC	blood vessel
48	chr14:68610200-68614400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:68610400-68612200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr14:68610600-68612800	Weak transcription	Fetal Muscle Trunk	muscle

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