Variant report

Variant	rs11852768
Chromosome Location	chr15:78347678-78347679
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78347166..78349130-chr15:78354163..78355850,2	MCF-7	breast:
2	chr15:78347136..78350100-chr15:78350153..78352439,2	K562	blood:
3	chr15:78346803..78349725-chr15:78352567..78355144,4	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11631578	0.99[ASN][1000 genomes]
rs11634607	0.99[ASN][1000 genomes]
rs11638311	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12148365	0.97[ASN][1000 genomes]
rs12591418	0.99[ASN][1000 genomes]
rs12899061	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901812	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12907701	0.96[ASN][1000 genomes]
rs12907814	0.98[ASN][1000 genomes]
rs12916362	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348257	0.97[ASN][1000 genomes]
rs1442293	0.96[ASN][1000 genomes]
rs1837913	0.96[ASN][1000 genomes]
rs2028546	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2044099	0.81[ASN][1000 genomes]
rs2241885	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2867985	0.96[ASN][1000 genomes]
rs2903702	0.98[ASN][1000 genomes]
rs3803380	0.93[ASN][1000 genomes]
rs4886553	0.99[ASN][1000 genomes]
rs4886554	0.99[ASN][1000 genomes]
rs4886555	0.95[ASN][1000 genomes]
rs4886994	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4886996	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886999	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4887000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317829	0.93[ASN][1000 genomes]
rs57220134	0.96[ASN][1000 genomes]
rs58578288	0.97[ASN][1000 genomes]
rs62011511	0.97[ASN][1000 genomes]
rs67559383	0.88[AFR][1000 genomes]
rs7166819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170746	0.99[ASN][1000 genomes]
rs7173128	0.86[ASN][1000 genomes]
rs7174489	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7181594	0.99[ASN][1000 genomes]
rs8029562	0.93[ASN][1000 genomes]
rs8030873	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9047	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:78331400-78348600	Weak transcription	A549	lung
5	chr15:78331600-78348600	Weak transcription	K562	blood
6	chr15:78337000-78347800	Weak transcription	Ovary	ovary
7	chr15:78342600-78348600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78342800-78348600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:78343000-78348400	Weak transcription	HMEC	breast
10	chr15:78343200-78354200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:78343400-78348600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:78343600-78348400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:78343600-78348600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:78343800-78348400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:78344400-78352000	Genic enhancers	Fetal Intestine Small	intestine
16	chr15:78344600-78348000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:78344800-78348200	Weak transcription	Right Ventricle	heart
18	chr15:78344800-78348600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:78344800-78348600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:78344800-78348800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:78344800-78357600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:78344800-78359800	Weak transcription	Fetal Brain Female	brain
23	chr15:78345000-78347800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:78345000-78348200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:78345000-78348600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:78345000-78348600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:78345000-78348600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:78345000-78348600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:78345000-78349000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr15:78345000-78352000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:78345000-78354200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:78345200-78347800	Weak transcription	Right Atrium	heart
33	chr15:78345200-78347800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:78345200-78348200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:78345200-78349000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:78345200-78351400	Weak transcription	Fetal Kidney	kidney
37	chr15:78345600-78347800	Weak transcription	Fetal Heart	heart
38	chr15:78345600-78348200	Weak transcription	HUVEC	blood vessel
39	chr15:78345600-78351800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:78346000-78348600	Weak transcription	Brain Germinal Matrix	brain
41	chr15:78346200-78347800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:78346200-78347800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:78346200-78347800	Weak transcription	Colonic Mucosa	Colon
44	chr15:78346200-78347800	Weak transcription	Lung	lung
45	chr15:78346200-78347800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:78346200-78347800	Weak transcription	HepG2	liver
47	chr15:78346200-78348200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:78346200-78348400	Weak transcription	Fetal Lung	lung
49	chr15:78346200-78348600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:78346200-78348800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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