Variant report

Variant	rs2903702
Chromosome Location	chr15:78370548-78370549
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:78369036-78370665	IMR90	lung:	n/a	n/a
2	HCFC1	chr15:78368897-78370952	Hela-S3	cervix:	n/a	n/a
3	MYC	chr15:78370465-78370619	MCF10A-Er-Src	breast:	n/a	n/a
4	MAZ	chr15:78368980-78371018	IMR90	lung:	n/a	n/a
5	ARID3A	chr15:78370138-78370612	HepG2	liver:	n/a	n/a
6	FOXA2	chr15:78370332-78370556	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78357496..78359399-chr15:78368822..78370574,2	MCF-7	breast:

Variant related genes	Relation type
TBC1D2B	TF binding region
ENSG00000167202	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1004855	0.85[AFR][1000 genomes]
rs11631578	0.98[ASN][1000 genomes]
rs11634607	0.98[ASN][1000 genomes]
rs11638311	0.82[ASN][1000 genomes]
rs11852768	0.98[ASN][1000 genomes]
rs12148365	0.96[ASN][1000 genomes]
rs12591418	0.98[ASN][1000 genomes]
rs12899061	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12901812	0.99[ASN][1000 genomes]
rs12907701	0.96[ASN][1000 genomes]
rs12907814	0.97[ASN][1000 genomes]
rs12916362	0.98[ASN][1000 genomes]
rs1348257	0.96[ASN][1000 genomes]
rs1442293	0.96[ASN][1000 genomes]
rs1837913	0.96[ASN][1000 genomes]
rs2028546	0.82[ASN][1000 genomes]
rs2044099	0.81[ASN][1000 genomes]
rs2867985	0.98[ASN][1000 genomes]
rs3803380	0.95[ASN][1000 genomes]
rs4886553	0.98[ASN][1000 genomes]
rs4886554	0.98[ASN][1000 genomes]
rs4886555	0.97[ASN][1000 genomes]
rs4886994	0.87[ASN][1000 genomes]
rs4886996	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4886999	0.98[ASN][1000 genomes]
rs4887000	0.98[ASN][1000 genomes]
rs56317829	0.95[ASN][1000 genomes]
rs57220134	0.96[ASN][1000 genomes]
rs58578288	0.96[ASN][1000 genomes]
rs62011511	0.96[ASN][1000 genomes]
rs7166819	0.98[ASN][1000 genomes]
rs7170746	0.98[ASN][1000 genomes]
rs7173128	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7181594	0.98[ASN][1000 genomes]
rs8029562	0.93[ASN][1000 genomes]
rs9047	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78367800-78370600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:78367800-78370600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:78368000-78370600	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr15:78368000-78370600	Active TSS	Psoas Muscle	Psoas
5	chr15:78368200-78370600	Active TSS	Aorta	Aorta
6	chr15:78368200-78370600	Active TSS	Fetal Kidney	kidney
7	chr15:78368600-78370600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78368600-78370600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr15:78368800-78370600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr15:78368800-78370600	Active TSS	Primary T cells from cord blood	blood
11	chr15:78368800-78370600	Active TSS	Brain Cingulate Gyrus	brain
12	chr15:78368800-78370600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:78368800-78370600	Active TSS	Fetal Brain Female	brain
14	chr15:78368800-78370600	Active TSS	HMEC	breast
15	chr15:78368800-78370800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr15:78369000-78370600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:78369000-78370600	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr15:78369000-78370600	Active TSS	GM12878-XiMat	blood
19	chr15:78369000-78370600	Active TSS	NHEK	skin
20	chr15:78369000-78370800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:78369200-78370600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:78369200-78370600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:78369200-78370800	Active TSS	Brain Anterior Caudate	brain
24	chr15:78369200-78370800	Active TSS	A549	lung
25	chr15:78369400-78370600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:78369400-78370600	Active TSS	NH-A	brain
27	chr15:78369800-78370600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:78369800-78370600	Active TSS	Brain Germinal Matrix	brain
29	chr15:78370000-78370600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr15:78370000-78372400	Weak transcription	Spleen	Spleen
31	chr15:78370200-78370600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:78370200-78370600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr15:78370200-78370600	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr15:78370200-78370600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr15:78370200-78370600	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr15:78370200-78370600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr15:78370200-78370600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr15:78370200-78370600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:78370200-78370600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr15:78370200-78370600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr15:78370200-78370600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:78370200-78370600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr15:78370200-78370600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr15:78370200-78370600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:78370200-78370600	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr15:78370200-78370600	Flanking Active TSS	Fetal Heart	heart
47	chr15:78370200-78370600	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr15:78370200-78370600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr15:78370200-78370600	Flanking Active TSS	Rectal Smooth Muscle	rectum
50	chr15:78370200-78370600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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