Variant report

Variant	rs9047
Chromosome Location	chr15:78369815-78369816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:134)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:134 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:78369219-78370343	Hela-S3	cervix:	n/a	n/a
2	YY1	chr15:78369420-78370296	HepG2	liver:	n/a	chr15:78369551-78369570
3	POLR2A	chr15:78369376-78370108	GM12878	blood:	n/a	n/a
4	MAX	chr15:78369285-78370337	ECC-1	luminal epithelium:	n/a	n/a
5	MAX	chr15:78369625-78369914	K562	blood:	n/a	n/a
6	RCOR1	chr15:78369228-78370233	K562	blood:	n/a	n/a
7	JUND	chr15:78369515-78370291	A549	lung:	n/a	n/a
8	POLR2A	chr15:78369436-78370208	GM18951	blood:	n/a	n/a
9	ZNF143	chr15:78369431-78370337	Hela-S3	cervix:	n/a	chr15:78370110-78370128 chr15:78370105-78370124 chr15:78370119-78370128 chr15:78370117-78370126
10	STAT5A	chr15:78369308-78369817	GM12878	blood:	n/a	chr15:78369505-78369517
11	CREB1	chr15:78369781-78370296	K562	blood:	n/a	n/a
12	POLR2A	chr15:78369366-78370217	K562	blood:	n/a	n/a
13	MAZ	chr15:78369333-78370305	Hela-S3	cervix:	n/a	n/a
14	UBTF	chr15:78369279-78370299	K562	blood:	n/a	n/a
15	EGR1	chr15:78369587-78370248	ECC-1	luminal epithelium:	n/a	chr15:78370055-78370069 chr15:78370105-78370129
16	CREB1	chr15:78369301-78370353	HepG2	liver:	n/a	n/a
17	PML	chr15:78369314-78369844	GM12878	blood:	n/a	n/a
18	ZNF143	chr15:78369498-78370394	H1-hESC	embryonic stem cell:	n/a	chr15:78370110-78370128 chr15:78370105-78370124 chr15:78370119-78370128 chr15:78370117-78370126
19	MAX	chr15:78369379-78369930	ECC-1	luminal epithelium:	n/a	n/a
20	POLR2A	chr15:78369682-78370122	MCF10A-Er-Src	breast:	n/a	n/a
21	HA-E2F1	chr15:78369436-78370257	Hela-S3	cervix:	n/a	n/a
22	ZNF143	chr15:78369713-78370498	K562	blood:	n/a	chr15:78370110-78370128 chr15:78370105-78370124 chr15:78370119-78370128 chr15:78370117-78370126
23	POLR2A	chr15:78369401-78370196	GM15510	blood:	n/a	n/a
24	POLR2A	chr15:78369400-78370207	ECC-1	luminal epithelium:	n/a	n/a
25	E2F6	chr15:78369737-78370151	K562	blood:	n/a	n/a
26	ZBTB7A	chr15:78369420-78370356	ECC-1	luminal epithelium:	n/a	n/a
27	ELF1	chr15:78369571-78370204	GM12878	blood:	n/a	chr15:78369595-78369604
28	MYC	chr15:78369286-78370407	NB4	blood:	n/a	n/a
29	MYC	chr15:78369449-78370469	K562	blood:	n/a	n/a
30	REST	chr15:78369191-78370221	H1-neurons	neurons:	n/a	chr15:78370190-78370200
31	RAD21	chr15:78369101-78370167	IMR90	lung:	n/a	chr15:78369272-78369285
32	ZEB1	chr15:78369360-78369935	GM12878	blood:	n/a	chr15:78369661-78369673
33	POLR2A	chr15:78369326-78370265	MCF-7	breast:	n/a	n/a
34	RUNX3	chr15:78369268-78370270	GM12878	blood:	n/a	n/a
35	POLR2A	chr15:78369394-78370211	HEK293	kidney:	n/a	n/a
36	MAZ	chr15:78369512-78370377	GM12878	blood:	n/a	n/a
37	MXI1	chr15:78369036-78370665	IMR90	lung:	n/a	n/a
38	E2F6	chr15:78369482-78370128	K562	blood:	n/a	n/a
39	CREB1	chr15:78369343-78370343	H1-hESC	embryonic stem cell:	n/a	n/a
40	MAX	chr15:78369334-78370413	HepG2	liver:	n/a	n/a
41	POLR2A	chr15:78369478-78370247	H1-neurons	neurons:	n/a	n/a
42	MAX	chr15:78369674-78369865	HepG2	liver:	n/a	n/a
43	CTCF	chr15:78369780-78369930	SAEC	small airway:	n/a	n/a
44	HCFC1	chr15:78368897-78370952	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr15:78369440-78370168	Gliobla	brain:	n/a	n/a
46	MAX	chr15:78369279-78370349	MCF-7	breast:	n/a	n/a
47	CHD1	chr15:78369281-78369855	GM12878	blood:	n/a	chr15:78369618-78369628 chr15:78369529-78369539
48	CTCF	chr15:78369740-78369890	AG04449	skin:	n/a	n/a
49	TCF12	chr15:78369492-78369854	A549	lung:	n/a	n/a
50	POLR2A	chr15:78369436-78370179	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:78369769-78369819	CMK	blood:	n/a
2	chr15:78369769-78369819	NT2-D1	testis:	n/a
3	chr15:78369769-78369819	NB4	blood:	n/a
4	chr15:78369769-78369819	HCT-116	colon:	n/a
5	chr15:78369769-78369819	Hepatocyte	liver:	n/a
6	chr15:78369769-78369819	HCPEpiC	choroid plexus:	n/a
7	chr15:78369769-78369819	HL-60	blood:	n/a
8	chr15:78369769-78369819	PFSK-1	brain:	n/a
9	chr15:78369769-78369819	HPAEpiC	pulmonary alveolar:	n/a
10	chr15:78369769-78369819	ECC-1	luminal epithelium:	n/a
11	chr15:78369769-78369819	BE2_C	brain:	n/a
12	chr15:78369769-78369819	H1-hESC	embryonic stem cell:	embryo
13	chr15:78369769-78369819	K562	blood:	n/a
14	chr15:78369769-78369819	HEK293	kidney:	embryo
15	chr15:78369769-78369819	Jurkat	blood:	n/a
16	chr15:78369769-78369819	A549	lung:	n/a
17	chr15:78369769-78369819	HCM	heart:	n/a
18	chr15:78369769-78369819	MCF-7	breast:	n/a
19	chr15:78369769-78369819	HCF	heart:	n/a
20	chr15:78369769-78369819	AG09319	gingival:	n/a
21	chr15:78369769-78369819	NHDF-neo	bronchial:	n/a
22	chr15:78369769-78369819	NH-A	brain:	n/a
23	chr15:78369769-78369819	IMR90	lung:	fetal
24	chr15:78369769-78369819	MCF10A-Er-Src	breast:	n/a
25	chr15:78369769-78369819	AoSMC	blood vessel:	n/a
26	chr15:78369769-78369819	GM12892	blood:	n/a
27	chr15:78369769-78369819	AG10803	skin:	n/a
28	chr15:78369769-78369819	HEEpiC	esophagus:	n/a
29	chr15:78369769-78369819	HRCEpiC	kidney:	n/a
30	chr15:78369769-78369819	HIPEpiC	eye:	n/a
31	chr15:78369769-78369819	GM12878	blood:	n/a
32	chr15:78369769-78369819	BJ	skin:	n/a
33	chr15:78369769-78369819	Hela-S3	cervix:	n/a
34	chr15:78369769-78369819	SK-N-MC	brain:	n/a
35	chr15:78369769-78369819	HRPEpiC	eye:	n/a
36	chr15:78369769-78369819	SAEC	small airway:	n/a
37	chr15:78369769-78369819	GM19239	blood:	n/a
38	chr15:78369769-78369819	HUVEC	blood vessel:	n/a
39	chr15:78369769-78369819	AG04450	lung:	fetal
40	chr15:78369769-78369819	GM12891	blood:	n/a
41	chr15:78369769-78369819	HepG2	liver:	n/a
42	chr15:78369769-78369819	HNPCEpiC	eye:	n/a
43	chr15:78369769-78369819	SKMC	muscle:	n/a
44	chr15:78369769-78369819	U87	brain:	n/a
45	chr15:78369769-78369819	T-47D	breast:	n/a
46	chr15:78369769-78369819	HMEC	breast:	n/a
47	chr15:78369769-78369819	ProgFib	skin:	n/a
48	chr15:78369769-78369819	HAEpiC	amniotic membrane:	n/a
49	chr15:78369769-78369819	RPTEC	kidney:	n/a
50	chr15:78369769-78369819	PrEC	prostate:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78357496..78359399-chr15:78368822..78370574,2	MCF-7	breast:

No data

Variant related genes	Relation type
SH2D7	TF binding region
SH2D7	CpG island
ENSG00000167202	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11631578	0.96[ASN][1000 genomes]
rs11634607	0.96[ASN][1000 genomes]
rs11852768	0.95[ASN][1000 genomes]
rs12148365	0.98[ASN][1000 genomes]
rs12591418	0.96[ASN][1000 genomes]
rs12899061	0.95[ASN][1000 genomes]
rs12901812	0.96[ASN][1000 genomes]
rs12907701	0.93[ASN][1000 genomes]
rs12907814	0.94[ASN][1000 genomes]
rs12916362	0.95[ASN][1000 genomes]
rs1348257	0.98[ASN][1000 genomes]
rs1442293	0.98[ASN][1000 genomes]
rs1837913	0.98[ASN][1000 genomes]
rs2044099	0.83[ASN][1000 genomes]
rs2867985	0.99[ASN][1000 genomes]
rs2903702	0.97[ASN][1000 genomes]
rs3803380	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886553	0.96[ASN][1000 genomes]
rs4886554	0.96[ASN][1000 genomes]
rs4886555	1.00[ASN][1000 genomes]
rs4886994	0.84[ASN][1000 genomes]
rs4886996	0.96[ASN][1000 genomes]
rs4886999	0.96[ASN][1000 genomes]
rs4887000	0.95[ASN][1000 genomes]
rs55704745	0.80[ASN][1000 genomes]
rs56317829	0.98[ASN][1000 genomes]
rs57220134	0.98[ASN][1000 genomes]
rs58578288	0.98[ASN][1000 genomes]
rs62011511	0.98[ASN][1000 genomes]
rs7166819	0.95[ASN][1000 genomes]
rs7170746	0.96[ASN][1000 genomes]
rs7173128	0.83[ASN][1000 genomes]
rs7181594	0.96[ASN][1000 genomes]
rs8029562	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78367600-78370400	Active TSS	Ovary	ovary
2	chr15:78367800-78370400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:78367800-78370600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:78367800-78370600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:78368000-78370400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:78368000-78370400	Active TSS	Gastric	stomach
7	chr15:78368000-78370600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr15:78368000-78370600	Active TSS	Psoas Muscle	Psoas
9	chr15:78368200-78370400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr15:78368200-78370400	Active TSS	Right Ventricle	heart
11	chr15:78368200-78370600	Active TSS	Aorta	Aorta
12	chr15:78368200-78370600	Active TSS	Fetal Kidney	kidney
13	chr15:78368400-78370400	Active TSS	Right Atrium	heart
14	chr15:78368600-78370200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr15:78368600-78370400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr15:78368600-78370400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:78368600-78370400	Active TSS	HSMMtube	muscle
18	chr15:78368600-78370600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:78368600-78370600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr15:78368800-78370200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr15:78368800-78370200	Active TSS	Esophagus	oesophagus
22	chr15:78368800-78370200	Active TSS	Left Ventricle	heart
23	chr15:78368800-78370200	Active TSS	Rectal Smooth Muscle	rectum
24	chr15:78368800-78370400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:78368800-78370400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:78368800-78370400	Active TSS	Brain Substantia Nigra	brain
27	chr15:78368800-78370400	Active TSS	Colon Smooth Muscle	Colon
28	chr15:78368800-78370400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr15:78368800-78370400	Active TSS	Lung	lung
30	chr15:78368800-78370400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr15:78368800-78370400	Active TSS	Small Intestine	intestine
32	chr15:78368800-78370400	Active TSS	Stomach Mucosa	stomach
33	chr15:78368800-78370400	Active TSS	HSMM	muscle
34	chr15:78368800-78370400	Active TSS	NHDF-Ad	bronchial
35	chr15:78368800-78370400	Active TSS	NHLF	lung
36	chr15:78368800-78370600	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr15:78368800-78370600	Active TSS	Primary T cells from cord blood	blood
38	chr15:78368800-78370600	Active TSS	Brain Cingulate Gyrus	brain
39	chr15:78368800-78370600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:78368800-78370600	Active TSS	Fetal Brain Female	brain
41	chr15:78368800-78370600	Active TSS	HMEC	breast
42	chr15:78368800-78370800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr15:78369000-78370000	Active TSS	Spleen	Spleen
44	chr15:78369000-78370200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:78369000-78370200	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr15:78369000-78370200	Active TSS	Muscle Satellite Cultured Cells	--
47	chr15:78369000-78370200	Active TSS	Liver	Liver
48	chr15:78369000-78370200	Active TSS	Thymus	Thymus
49	chr15:78369000-78370400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr15:78369000-78370400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links