Variant report

Variant	rs55704745
Chromosome Location	chr15:78323375-78323376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78323235..78324806-chr15:78328346..78331306,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221476	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1004855	0.87[ASN][1000 genomes]
rs10519181	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11638311	0.94[ASN][1000 genomes]
rs12148365	0.81[ASN][1000 genomes]
rs12594823	0.93[ASN][1000 genomes]
rs12911332	0.85[ASN][1000 genomes]
rs1348257	0.81[ASN][1000 genomes]
rs1442293	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1837913	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2028546	0.94[ASN][1000 genomes]
rs2044099	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2241885	0.89[ASN][1000 genomes]
rs3803380	0.82[ASN][1000 genomes]
rs4395040	0.87[AMR][1000 genomes]
rs4886555	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4886994	0.90[ASN][1000 genomes]
rs56317829	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57220134	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58578288	0.81[ASN][1000 genomes]
rs62011511	0.81[ASN][1000 genomes]
rs7173128	0.92[ASN][1000 genomes]
rs7174489	0.87[ASN][1000 genomes]
rs72732535	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8030713	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8030873	0.90[ASN][1000 genomes]
rs9047	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3366114	chr15:78322913-78323425	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78301400-78342200	Weak transcription	HMEC	breast
3	chr15:78303200-78342400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:78305400-78329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78305600-78325800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:78307200-78342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:78308800-78327200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78309200-78330200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:78309200-78330800	Weak transcription	A549	lung
10	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:78311800-78323400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:78311800-78326800	Weak transcription	K562	blood
13	chr15:78312600-78323400	Strong transcription	Dnd41	blood
14	chr15:78312600-78323400	Strong transcription	Osteobl	bone
15	chr15:78313000-78327600	Weak transcription	Fetal Brain Male	brain
16	chr15:78316000-78324000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:78316000-78332400	Weak transcription	Hela-S3	cervix
18	chr15:78316200-78324600	Strong transcription	Fetal Intestine Small	intestine
19	chr15:78316200-78326200	Weak transcription	Fetal Kidney	kidney
20	chr15:78317000-78324200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:78317000-78327800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:78317000-78344400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:78317200-78324000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:78317400-78324200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:78317400-78326000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:78317400-78326200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:78317400-78342600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:78317600-78324600	Strong transcription	Liver	Liver
29	chr15:78317600-78326800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:78317600-78327000	Weak transcription	NH-A	brain
31	chr15:78317600-78327400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:78317800-78323600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:78317800-78324200	Weak transcription	Brain Angular Gyrus	brain
34	chr15:78317800-78324200	Weak transcription	Right Ventricle	heart
35	chr15:78317800-78324600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr15:78317800-78326400	Weak transcription	Gastric	stomach
37	chr15:78317800-78326600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:78317800-78326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:78317800-78326600	Weak transcription	Spleen	Spleen
40	chr15:78317800-78331000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:78317800-78344400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:78317800-78344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:78318200-78323400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr15:78318200-78323400	Strong transcription	Placenta	Placenta
45	chr15:78318400-78324200	Weak transcription	NHDF-Ad	bronchial
46	chr15:78318400-78325800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:78318400-78326800	Weak transcription	HepG2	liver
48	chr15:78318800-78323400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr15:78318800-78326600	Weak transcription	Stomach Mucosa	stomach
50	chr15:78319200-78323400	Strong transcription	Adipose Nuclei	Adipose

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