The 2.0 version of rSNPBase

Variant report

Variant rs56317829
Chromosome Location chr15:78364444-78364445
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:78347400-78367800 Enhancers Placenta Placenta
2 chr15:78354200-78366400 Enhancers Primary monocytes fromperipheralblood blood
3 chr15:78354600-78365400 Enhancers Skeletal Muscle Male skeletal muscle
4 chr15:78354600-78366400 Enhancers Fetal Adrenal Gland Adrenal Gland
5 chr15:78355600-78365400 Enhancers Small Intestine intestine
6 chr15:78357400-78365000 Enhancers Sigmoid Colon Sigmoid Colon
7 chr15:78357600-78365200 Enhancers Lung lung
8 chr15:78358400-78366000 Enhancers HepG2 liver
9 chr15:78358800-78367800 Weak transcription HMEC breast
10 chr15:78361200-78364600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr15:78361200-78364600 Enhancers NHDF-Ad bronchial
12 chr15:78361200-78364800 Enhancers Osteobl bone
13 chr15:78361200-78365200 Weak transcription Fetal Brain Male brain
14 chr15:78361400-78364600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr15:78361400-78364800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr15:78361400-78364800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr15:78361400-78367800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
18 chr15:78361400-78368000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr15:78361400-78368000 Weak transcription Fetal Heart heart
20 chr15:78361400-78368200 Weak transcription Brain Germinal Matrix brain
21 chr15:78361600-78364600 Weak transcription Aorta Aorta
22 chr15:78361600-78364800 Enhancers Muscle Satellite Cultured Cells --
23 chr15:78361600-78364800 Weak transcription Fetal Brain Female brain
24 chr15:78361600-78365400 Enhancers Skeletal Muscle Female skeletal muscle
25 chr15:78361600-78369200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr15:78362000-78365000 Enhancers Primary B cells from cord blood blood
27 chr15:78362000-78366000 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr15:78362600-78364800 Enhancers Duodenum Mucosa Duodenum
29 chr15:78362600-78365600 Enhancers Primary mononuclear cells fromperipheralblood Blood
30 chr15:78362600-78365600 Enhancers Thymus Thymus
31 chr15:78362800-78364600 Genic enhancers Fetal Thymus thymus
32 chr15:78362800-78364800 Enhancers Primary T killer memory cells from peripheral blood blood
33 chr15:78362800-78368000 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr15:78362800-78368000 Enhancers Primary T helper cells fromperipheralblood blood
35 chr15:78362800-78368000 Weak transcription Esophagus oesophagus
36 chr15:78362800-78369200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr15:78363000-78364600 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr15:78363000-78364600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
39 chr15:78363000-78364600 Enhancers Primary T helper cells PMA-I stimulated --
40 chr15:78363000-78364600 Weak transcription Fetal Lung lung
41 chr15:78363000-78364600 Weak transcription NHEK skin
42 chr15:78363000-78364800 Enhancers GM12878-XiMat blood
43 chr15:78363000-78365000 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr15:78363000-78365000 Weak transcription Stomach Smooth Muscle stomach
45 chr15:78363000-78365000 Weak transcription A549 lung
46 chr15:78363000-78368000 Weak transcription H9 Cell Line embryonic stem cell
47 chr15:78363000-78368000 Weak transcription Primary B cells from peripheral blood blood
48 chr15:78363200-78364600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr15:78363200-78364600 Weak transcription Brain Substantia Nigra brain
50 chr15:78363200-78364800 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015