Variant report

Variant	rs11855188
Chromosome Location	chr15:77840714-77840715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77833855..77835939-chr15:77840027..77842265,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11633054	0.83[JPT][hapmap]
rs11854328	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11857450	0.86[JPT][hapmap]
rs11857860	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12324627	0.86[JPT][hapmap]
rs12900004	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs12901130	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs12907746	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2055901	0.86[JPT][hapmap]
rs4886869	0.83[JPT][hapmap]
rs4886873	0.85[CEU][hapmap]
rs4886875	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4886876	1.00[CEU][hapmap];0.83[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4886877	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62009090	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6495240	0.84[JPT][hapmap]
rs7162637	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7178572	0.86[JPT][hapmap]
rs8034133	0.87[JPT][hapmap]
rs907369	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77827000-77845400	Weak transcription	Fetal Kidney	kidney
2	chr15:77829400-77844800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:77833800-77843200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:77834000-77841200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:77834200-77840800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:77836200-77841000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:77836200-77841000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:77836200-77841000	Weak transcription	Fetal Thymus	thymus
9	chr15:77836200-77841200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:77836200-77841200	Weak transcription	K562	blood
11	chr15:77836200-77841400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:77836200-77846600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:77838600-77840800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:77838600-77849800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:77838800-77843400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:77838800-77849000	Weak transcription	Gastric	stomach
17	chr15:77839000-77840800	Weak transcription	Placenta	Placenta
18	chr15:77839000-77841200	Weak transcription	Spleen	Spleen
19	chr15:77839000-77842800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:77839000-77842800	Weak transcription	HSMMtube	muscle
21	chr15:77839000-77843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:77839000-77844400	Weak transcription	Stomach Mucosa	stomach
23	chr15:77839800-77846400	Weak transcription	Fetal Heart	heart
24	chr15:77840000-77841000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:77840000-77842800	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:77840200-77840800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:77840200-77841800	Enhancers	Primary B cells from cord blood	blood
28	chr15:77840400-77841600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr15:77840400-77841600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:77840400-77841600	Enhancers	Primary hematopoietic stem cells	blood
31	chr15:77840400-77841600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:77840400-77841800	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr15:77840400-77842200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:77840600-77840800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:77840600-77841400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr15:77840600-77841400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr15:77840600-77841600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:77840600-77848600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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