Variant report

Variant	rs11856283
Chromosome Location	chr15:78988398-78988399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10450964	1.00[EUR][1000 genomes]
rs10450994	1.00[EUR][1000 genomes]
rs10450995	1.00[EUR][1000 genomes]
rs11072773	1.00[EUR][1000 genomes]
rs11855783	1.00[EUR][1000 genomes]
rs17588	1.00[EUR][1000 genomes]
rs28820031	1.00[EUR][1000 genomes]
rs55927929	1.00[EUR][1000 genomes]
rs56740585	1.00[EUR][1000 genomes]
rs56778876	1.00[EUR][1000 genomes]
rs58432603	1.00[EUR][1000 genomes]
rs59046470	1.00[EUR][1000 genomes]
rs60507267	1.00[EUR][1000 genomes]
rs61208420	1.00[EUR][1000 genomes]
rs73467242	1.00[EUR][1000 genomes]
rs73467244	1.00[EUR][1000 genomes]
rs73467262	1.00[EUR][1000 genomes]
rs73467265	1.00[EUR][1000 genomes]
rs73467279	1.00[EUR][1000 genomes]
rs74024421	1.00[EUR][1000 genomes]
rs9920382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974713	chr15:78945824-78996783	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78979000-78988400	Weak transcription	Left Ventricle	heart
2	chr15:78983600-78988800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:78986600-78988600	Enhancers	Spleen	Spleen
4	chr15:78987400-78988600	Enhancers	GM12878-XiMat	blood
5	chr15:78988000-78988400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:78988000-78990400	Enhancers	Liver	Liver
7	chr15:78988200-78988600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:78988200-78988600	Enhancers	Esophagus	oesophagus
9	chr15:78988200-78988600	Enhancers	Ovary	ovary
10	chr15:78988200-78988600	Enhancers	Pancreas	Pancrea
11	chr15:78988200-78988600	Enhancers	K562	blood
12	chr15:78988200-78988800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:78988200-78989000	Enhancers	Fetal Heart	heart

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