Variant report

Variant	rs59046470
Chromosome Location	chr15:78845291-78845292
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78844003..78845527-chr15:78845642..78848545,2	K562	blood:
2	chr15:78831431..78836974-chr15:78839813..78847662,20	MCF-7	breast:
3	chr15:78843495..78845892-chr15:78851600..78855221,3	K562	blood:
4	chr15:78838010..78843726-chr15:78843842..78847469,5	MCF-7	breast:
5	chr15:78840813..78846169-chr15:78854868..78858995,9	MCF-7	breast:
6	chr15:78844056..78846099-chr15:78848008..78850321,3	K562	blood:
7	chr15:78843179..78845391-chr15:78851308..78853669,4	K562	blood:
8	chr15:78843350..78846204-chr15:78880835..78882358,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169684	Chromatin interaction
ENSG00000041357	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10450964	1.00[EUR][1000 genomes]
rs10450994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10450995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10851904	1.00[EUR][1000 genomes]
rs10851905	1.00[EUR][1000 genomes]
rs11072773	1.00[EUR][1000 genomes]
rs11855783	1.00[EUR][1000 genomes]
rs11856232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856283	1.00[EUR][1000 genomes]
rs11856900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969842	1.00[EUR][1000 genomes]
rs16969845	1.00[EUR][1000 genomes]
rs17588	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs28820031	1.00[EUR][1000 genomes]
rs34990112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4887040	1.00[EUR][1000 genomes]
rs4887044	1.00[EUR][1000 genomes]
rs55927929	1.00[EUR][1000 genomes]
rs56182392	1.00[AMR][1000 genomes]
rs56740585	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56778876	1.00[EUR][1000 genomes]
rs58432603	1.00[EUR][1000 genomes]
rs59098354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60507267	1.00[EUR][1000 genomes]
rs61208420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467242	1.00[EUR][1000 genomes]
rs73467244	1.00[EUR][1000 genomes]
rs73467262	1.00[EUR][1000 genomes]
rs73467265	1.00[EUR][1000 genomes]
rs73467279	1.00[EUR][1000 genomes]
rs74024421	1.00[EUR][1000 genomes]
rs9920382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1038816	chr15:78796434-78881087	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78836200-78857200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:78841200-78856800	Weak transcription	Hela-S3	cervix
3	chr15:78842000-78845800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:78842000-78857400	Weak transcription	Psoas Muscle	Psoas
5	chr15:78842200-78848600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:78842400-78845400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:78842400-78845600	Weak transcription	Osteobl	bone
8	chr15:78842400-78846400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:78843000-78845400	Weak transcription	NHEK	skin
10	chr15:78843000-78845800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:78843000-78845800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:78843000-78845800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:78843000-78846000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:78843000-78846600	Weak transcription	NHLF	lung
15	chr15:78843000-78848600	Weak transcription	Brain Substantia Nigra	brain
16	chr15:78843000-78857200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:78843200-78845400	Weak transcription	Fetal Intestine Small	intestine
18	chr15:78843200-78846200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:78843200-78846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:78843200-78857200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:78843400-78845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:78843400-78845600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:78843400-78845600	Weak transcription	Lung	lung
24	chr15:78843400-78845800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:78843400-78846400	Weak transcription	Placenta	Placenta
26	chr15:78843400-78846400	Weak transcription	HMEC	breast
27	chr15:78843400-78847000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:78843400-78847000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:78843400-78850600	Weak transcription	HepG2	liver
30	chr15:78843400-78853600	Weak transcription	K562	blood
31	chr15:78843400-78857000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:78843600-78845600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:78843600-78845600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:78843600-78845600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:78843600-78845800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr15:78843600-78845800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:78843600-78845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:78843600-78845800	Weak transcription	Dnd41	blood
39	chr15:78843600-78846400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:78843600-78846600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:78843600-78846600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:78843600-78847000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:78843600-78847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:78843600-78847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:78843600-78847200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:78843600-78847400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr15:78843600-78847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:78843600-78847600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:78843600-78847800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr15:78843600-78848600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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