Variant report

Variant	rs4887044
Chromosome Location	chr15:78651305-78651306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78631678..78634214-chr15:78650319..78652943,2	MCF-7	breast:
2	chr15:78648755..78651653-chr15:78653927..78656682,3	K562	blood:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10450964	1.00[EUR][1000 genomes]
rs10450994	1.00[EUR][1000 genomes]
rs10450995	1.00[EUR][1000 genomes]
rs10851904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10851905	1.00[EUR][1000 genomes]
rs11855783	1.00[EUR][1000 genomes]
rs11856232	1.00[EUR][1000 genomes]
rs11856900	1.00[EUR][1000 genomes]
rs16969842	1.00[EUR][1000 genomes]
rs16969845	1.00[EUR][1000 genomes]
rs17588	1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs34990112	1.00[EUR][1000 genomes]
rs4887040	1.00[EUR][1000 genomes]
rs4887043	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58432603	1.00[EUR][1000 genomes]
rs59046470	1.00[EUR][1000 genomes]
rs59098354	1.00[EUR][1000 genomes]
rs61208420	1.00[EUR][1000 genomes]
rs61695517	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78634600-78652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:78640800-78653200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:78641000-78653400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:78641200-78651400	Weak transcription	Fetal Kidney	kidney
5	chr15:78645000-78658200	Weak transcription	Right Atrium	heart
6	chr15:78650200-78651400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:78650200-78652600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:78650400-78651400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr15:78650400-78651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:78650400-78651600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr15:78650400-78651600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:78650400-78651800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:78650400-78651800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr15:78650400-78652000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:78650400-78652000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:78650400-78652200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:78650400-78652800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:78650400-78658800	Enhancers	Fetal Muscle Leg	muscle
19	chr15:78650600-78651400	Enhancers	HepG2	liver
20	chr15:78651000-78651600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr15:78651200-78651400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr15:78651200-78651400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:78651200-78651600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:78651200-78652600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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