Variant report

Variant	rs16969842
Chromosome Location	chr15:78716584-78716585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10450964	1.00[EUR][1000 genomes]
rs10450994	1.00[EUR][1000 genomes]
rs10450995	1.00[EUR][1000 genomes]
rs10851904	1.00[EUR][1000 genomes]
rs10851905	1.00[EUR][1000 genomes]
rs11855783	1.00[EUR][1000 genomes]
rs11856232	1.00[EUR][1000 genomes]
rs11856900	1.00[EUR][1000 genomes]
rs16969845	1.00[EUR][1000 genomes]
rs17588	1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs34990112	1.00[EUR][1000 genomes]
rs4887040	1.00[EUR][1000 genomes]
rs4887044	1.00[EUR][1000 genomes]
rs56740585	1.00[EUR][1000 genomes]
rs58432603	1.00[EUR][1000 genomes]
rs59046470	1.00[EUR][1000 genomes]
rs59098354	1.00[EUR][1000 genomes]
rs61208420	1.00[EUR][1000 genomes]
rs61695517	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78700800-78722000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:78712600-78718000	Weak transcription	Hela-S3	cervix
4	chr15:78713000-78718000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:78713400-78717400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr15:78713400-78717600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:78715000-78720800	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:78715000-78721000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:78715200-78717800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:78715600-78717000	Weak transcription	Dnd41	blood
11	chr15:78715600-78717600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:78715600-78717600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:78716200-78716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:78716400-78726200	Weak transcription	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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