Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78720134..78723465-chr15:78728938..78732082,4	MCF-7	breast:
2	chr15:78715399..78718078-chr15:78719259..78720829,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10450964	1.00[ASW][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10450994	1.00[EUR][1000 genomes]
rs10450995	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs10851904	1.00[EUR][1000 genomes]
rs10851905	1.00[EUR][1000 genomes]
rs11855783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856232	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11856900	1.00[EUR][1000 genomes]
rs16969840	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[ASN][1000 genomes]
rs16969842	1.00[EUR][1000 genomes]
rs16969858	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs16969920	1.00[TSI][hapmap]
rs17588	1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs34990112	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4887040	1.00[EUR][1000 genomes]
rs4887043	1.00[TSI][hapmap]
rs4887044	1.00[EUR][1000 genomes]
rs56740585	1.00[EUR][1000 genomes]
rs58432603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046470	1.00[EUR][1000 genomes]
rs59098354	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61208420	1.00[EUR][1000 genomes]
rs61695517	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8040826	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78700800-78722000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:78715000-78720800	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:78715000-78721000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:78716400-78726200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:78718800-78721000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:78719600-78720800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr15:78719800-78720800	Enhancers	K562	blood
9	chr15:78719800-78721000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr15:78720400-78720800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:78720600-78720800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:78720600-78720800	Enhancers	HepG2	liver

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